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Detailed information on CNT30436289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676336Aegilops tauschiiSetaria viridis9.5121.593.0243forward
CNT30386779Aegilops tauschiiTriticum turgidum95.3557.5494.9431forward
CNT30250949Aegilops tauschiiAvena sativa43.3648.8885.71196forward
CNT30658660Aegilops tauschiiTriticum dicoccoides92.0457.1494.95416forward
CNT30138315Aegilops tauschiiLolium perenne32.364.0485.62146forward
CNT30680726Aegilops tauschiiTriticum urartu36.7351.2394.58166forward
CNT30578365Aegilops tauschiiOryza barthii36.9529.5181.44167forward

Expression of CNT30436289

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MHGAMADVTSPQVTAPDAISATASAASTANTATSATRAIEDLVLRLACWKPWSWEGAESLISMCGGGGDGTLWSG

>peptide 2 (73 aa)
SQLTLLLMGKETETPHSPGMLAALPMLMPLNDPARFLRQRHAACRSAEVDALPFRVLTPLQHPAEGDDACPVA*

>peptide 3 (66 aa)
VAVDVVVDGERDGDAALAGDVGGVAHADALERPRQVLEAAARRLPVGRGGRLAIQGPHPAAAPRRG*

Sequence

>CNT30436289
GTCGCAGTTGACGTTGTTGTTGATGGGGAAAGAGACGGAGACGCCGCACTCGCCGGGGATGTTGGCGGCGTTGCCCATGCTGATGCCCTTGAACGACCCC
GCCAGGTTCTTGAGGCAGCGGCACGCCGCCTGCCGGTCGGCCGAGGTGGACGCCTTGCCATTCAGGGTCCTCACCCCGCTGCAGCACCCCGCCGAGGGTG
ACGACGCTTGCCCCGTCGCGTAGGACATGCACGGCGCGATGGCGGACGTCACGTCGCCGCAGGTCACCGCCCCGGACGCCATCTCCGCCACCGCCAGTGC
CGCGAGCACGGCGAACACGGCGACCAGTGCCACGCGAGCCATCGAGGATCTAGTGCTTCGGCTTGCTTGCTGGAAACCGTGGAGCTGGGAAGGAGCTGAG
AGCTTGATTAGCATGTGTGGTGGTGGTGGAGATGGAACTCTGTGGAGCGGGG