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Detailed information on CNT3043617


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001024, E-value = 6e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381906Prunus dulcisManihot esculenta89.8568.5281.98788forward
CNT30124865Prunus dulcisPhyscomitrium patens86.0956.4783.44755forward
CNT30154607Prunus dulcisPrunus persica10068.6299.54877forward

Expression of CNT3043617

Peptides detected in this lncRNA

>peptide 1 (46 aa)
AFLVLNLRLHIVNRIRALDLQSYCLPCKGLHEYLHTTSQTQNQVQS*

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSELSTSRVMVFPVRVLTKICIPPLNRRTK*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPLSRRTKCKVDSFWML*

Sequence

>CNT3043617
GCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGACCTCCAAAGTTATTGTCTTCCCTGTAAGGGTCTTCACGAATATC
TGCATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTACCGTCCTCCAATTGCTTACCGGCGA
AGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACCTCCAGAGTAATTGT
TTTCCCGGTTAGGGTTTTGACGAAAATCTGCATACCACCTCTCAGTCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTT
CGGCCGTCCTCCAATTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTAT
CAGAGCTCTCGACTTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATACCACCCCTCAATCGCAGAACCAAGTGAAGAGTTGATTC
CTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAATTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGGGGAATTCCCTCCTTGTCTTGG
ATCTTGGCCTTGACGTTGTCGATTGTGTCAGAGCTCTCCACCTCGAGAGTGATTGTCTTGCCGGTTAGGGTTTTGACGAAGACCTGCATGATTGTCAATC
TCAGAAGAAAAAAAATCGAATAGGAAATTGGAAGAGAGAATTTCAGGAGCGATTTAAAAAGGCTTTGAGAGAATTGT