Detailed information on CNT30436135


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 8e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555688Aegilops tauschiiOryza glaberrima55.936.6485.32218forward
CNT30258429Aegilops tauschiiAvena sativa77.4458.0886.09302forward
CNT30685518Aegilops tauschiiTriticum urartu74.3665.1792.07290forward
CNT30597252Aegilops tauschiiOryza meridionalis73.3362.8685.31286forward
CNT30104436Aegilops tauschiiOryza rufipogon72.3151.6585.82282forward

Expression of CNT30436135

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MYISYFNLHFRPCRIPRSLVALPDSSQPGGLKAMKLTHCTWRMLSKPMTRT*

>peptide 2 (43 aa)
EKAEPPTNVTNMTCISVTSTCTLGLAGFLAAWWPCQIPRSLVA*

Sequence

>CNT30436135
GAGAAAGCAGAGCCGCCGACAAATGTGACTAACATGACATGTATATCAGTTACTTCAACTTGCACTTTAGGCCTTGCCGGATTCCTCGCAGCCTGGTGGC
CTTGCCAGATTCCTCGCAGCCTGGTGGCCTGAAGGCAATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAAGCCGATGACACGGACATAGGCGTCA
GGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGCGTTGCGTCGGTGCACCCGAACATAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTC
GACCTGCTTTAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAAT