Detailed information on CNT30436120


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 6e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677187Aegilops tauschiiSetaria viridis46.4579.2489.52229forward
CNT30546820Aegilops tauschiiIpomoea triloba19.4746.8382.2996forward
CNT30180691Aegilops tauschiiSecale cereale27.7943.2294.89137forward
CNT30539981Aegilops tauschiiBrassica napus20.289.8483100forward
CNT30449919Aegilops tauschiiSaccharum spontaneum29.4129.4782.76145forward
CNT30134938Aegilops tauschiiLolium perenne44.0239.8990.78217forward
CNT30353463Aegilops tauschiiEragrostis tef48.0717.1590.72237forward
CNT30117829Aegilops tauschiiOryza nivara33.2727.3895.12164forward

Expression of CNT30436120

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MIPREQFLQRNMMECGRQTEHKGGTRLQNYPGLQGEQTNLIEAQHGGIARRPTRLRSARQPRHMYHHPTPCTSCSRARSRACRRRGQTSRPRP*

>peptide 2 (36 aa)
YTKIIWKIIGKYSTFHDPTRTIPTKKYDGMWTANRA*

>peptide 3 (74 aa)
MLSSEKPGMSKERANFSTSTLRFSMSLLFTRPLEKSLSSLPCSFWMFRQMVTAWWRNSAICSKSFSTRPLEVIAG

Sequence

>CNT30436120
CGTACACAAAAATAATATGGAAGATTATTGGCAAATACTCAACATTCCATGATCCCACGCGAACAATTCCTACAAAGAAATATGATGGAATGTGGACGGC
AAACAGAGCATAAAGGTGGGACGCGTTTACAGAACTATCCAGGGCTCCAGGGCGAGCAGACAAATCTCATAGAAGCACAGCACGGTGGCATTGCGCGGCG
GCCAACAAGGCTTAGAAGCGCGAGACAACCACGGCATATGTATCATCATCCTACTCCTTGTACTTCATGCTCTCGAGCGAGAAGCCGGGCATGTCGAAGG
AGAGGGCAAACTTCTCGACCTCGACCTTGAGGTTCTCGATGTCCTTGTTGTTCACCAGGCCCTTGGAGAAGTCCTTGAGCAGCTTGCCGTGCTCCTTCTG
GATGTTCAGGCAGATGGTCACAGCCTGGTGGAGGAACTCGGCGATCTGCTCGAAGTCCTTCTCGACCAGACCCCTGGAAGTCATCGCCGGAGC