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Detailed information on CNT30436090


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 3e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Aegilops tauschiiOryza sativa48.3265.6782.9503forward
CNT30520361Aegilops tauschiiSetaria italica27.6712.0182.29288forward
CNT30531266Aegilops tauschiiEucalyptus grandis20.1749.6582.38210forward
CNT30386550Aegilops tauschiiTriticum turgidum26.1364.9294.12272forward
CNT30569510Aegilops tauschiiActinidia chinensis7.8839.4295.1282forward
CNT30586754Aegilops tauschiiMusa acuminata8.8434.0794.5792forward
CNT3085023Aegilops tauschiiVigna radiata12.0125.8384125forward
CNT30553393Aegilops tauschiiOryza glaberrima18.0637.7587.77188forward
CNT30254684Aegilops tauschiiAvena sativa7.9736.8993.9883forward
CNT30657898Aegilops tauschiiTriticum dicoccoides37.4653.3595.64390forward
CNT30612661Aegilops tauschiiArabis alpina7.6827.688580forward
CNT30232947Aegilops tauschiiAnanas comosus5.9626.1693.5562forward
CNT30218729Aegilops tauschiiKalanchoe fedtschenkoi7.9728.6286.7583forward
CNT30681461Aegilops tauschiiTriticum urartu32.7680.6195.01341forward
CNT30148068Aegilops tauschiiBrachypodium distachyon12.4922.4591.54130forward
CNT30102682Aegilops tauschiiOryza rufipogon17.239.2589.39179forward
CNT30604398Aegilops tauschiiOryza punctata36.716.1682.46382forward
CNT30113851Aegilops tauschiiFicus carica7.6828.889580forward

Expression of CNT30436090

Peptides detected in this lncRNA

>peptide 1 (29 aa)
THAPHNKLTHVPNCSSCHSQRFYITGSNN*

>peptide 2 (30 aa)
MPPKAQAMPSTPTPPHGKSSVATNSAMMAR*

>peptide 3 (52 aa)
MFQIAAVVTHSGFTLQGVIIEGCKRDPRITHAGLSLTHMHAQTLNDEAGWTR*

>peptide 4 (55 aa)
MTAAPRLLAGLMPVPVMGMVARCTMKTANPMGSGASTGTCESRALRLGSVAEKTV*

>peptide 5 (64 aa)
MLAPPPLAWYASFMMPLTMPAPTMPPAHCATMYITARSSDTLRARRSPKVTAGLMWPPEMPAVQ*

Sequence

>CNT30436090
CACGCATGCACCTCACAATAAATTAACCCATGTTCCAAATTGCAGCAGTTGTCACTCACAGCGGTTTTACATTACAGGGAGTAATAATTGAAGGGTGCAA
ACGCGACCCACGAATCACGCATGCTGGCCTTTCTCTCACTCACATGCATGCACAGACACTGAACGACGAGGCCGGATGGACACGCTAGCTTGTGTGGCTG
GCTAGCGCGGTGGGTGACGGTTGCATTAAATTATTGGCCGGCCGGCTCACTTAATTACGTGGTTGTCCCATGCGGCCTTCTTGTTGTAGATGACGGCGGC
GCCGAGGCTCCTGGCGGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCGAGGTGCACCATGAAGACCGCGAACCCGATGGGGAGCGGCGCCAGCACG
GGGACGTGCGAGTCGCGGGCGCTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGACGATCTCCGCCCCCAGCGCGGTGC
CGCGGGAGAAGCCGGAGGCCACCATGTTGGCGCCGCCGCCGTTGGCCTGGTACGCGTCCTTCATGATGCCCTTGACGATGCCGGCGCCCACGATGCCGCC
CGCGCACTGCGCCACGATGTACATCACCGCGCGTAGCAGCGACACCTTGCGCGCCAGGAGGAGCCCGAAGGTGACGGCCGGGTTGATGTGGCCGCCCGAG
ATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCGAGCACGCCGACGCCGCCGCACGGGAAGAGCAGCGTGGCGA
CGAACTCGGCGATGATGGCCCGGTAGAAGGACCACATCCGGAGCTCCCCCATGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGTGCGCCGG
CGCGGCGTGCTCCGGCTCCTCGCTCACCTCCTTGGCCATGGCTCCTCTCTCTCTGTCTCTCTCTCTCTTCTCTGATGGATGGATGGATGGGGGTGGTGGA
GGTGGAGTGTGATGAGTGAGTGTGTTTTTGCCGCGCCGGCG