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Detailed information on CNT30435868


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Aegilops tauschiiSetaria italica99.7142.1799.281390forward
CNT30640799Aegilops tauschiiNymphaea colorata53.1697.3787.99741forward
CNT30619000Aegilops tauschiiSesamum indicum60.927.7994.82849forward
CNT30730481Aegilops tauschiiCorchorus capsularis68.7277.8996.14958reverse complement
CNT30490123Aegilops tauschiiOlea europaea37.7330.2197.15526forward
CNT30505430Aegilops tauschiiNicotiana attenuata60.936.1797.29849forward
CNT30712870Aegilops tauschiiGlycine max31.0626.0595.61433forward
CNT3046714Aegilops tauschiiPrunus dulcis14.292.9687.37198reverse complement
CNT30157603Aegilops tauschiiPistacia vera53.4478.0990.6745forward
CNT3092080Aegilops tauschiiSolanum tuberosum20.0948.0395280forward
CNT30592527Aegilops tauschiiMusa acuminata13.5656.5998.41189forward
CNT30543268Aegilops tauschiiBrassica napus79.8448.595.61113forward
CNT30511493Aegilops tauschiiSolanum lycopersicum21.7433.8996.7303reverse complement
CNT3082633Aegilops tauschiiBrassica juncea22.6796.0595.57316forward
CNT30140120Aegilops tauschiiLolium perenne10041.9899.351394forward
CNT30605266Aegilops tauschiiGossypium raimondii34.3622.8996.45479forward
CNT30207637Aegilops tauschiiHelianthus annuus60.943.496.11849forward
CNT30689137Aegilops tauschiiTriticum urartu71.7483.1398.51000forward
CNT30360996Aegilops tauschiiLactuca sativa60.958.1997.41849forward
CNT30434643Aegilops tauschiiPapaver somniferum53.66100.5493.18748forward
CNT3057903Aegilops tauschiiAmborella trichopoda80.1346.6291.761117reverse complement
CNT30108930Aegilops tauschiiOryza longistaminata10059.5799.281394forward
CNT3038420Aegilops tauschiiCucumis melo48.4947.3497.34676forward
CNT30331546Aegilops tauschiiDioscorea rotundata29.9110094.96417reverse complement
CNT3099908Aegilops tauschiiOryza rufipogon19.87101.0997.47277forward
CNT30499372Aegilops tauschiiDigitaria exilis10041.0199.281394forward
CNT30603680Aegilops tauschiiOryza punctata10035.3299.281394forward
CNT30113381Aegilops tauschiiFicus carica14.3544.8497200reverse complement

Expression of CNT30435868

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 2 (39 aa)
MSNGKSCEKHDRLPVEGFLRSVNLRRVTRSLRNPRKGCRP

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

Sequence

>CNT30435868
CTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAA
GCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGTTGCCGTAGCGCGCCCTACGGAGTTGTACA
AAGTCAGCAACCGTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCG
GCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACGCGAGAAAGG
GGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGAGA
ACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGA
ACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTT
GAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATA
TAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACC
AACCCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTAC
GCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAA
TAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTA
GCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGGGAAATCCTGTGAAAAAC
ACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGACTCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGAT