Detailed information on CNT30435670


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30214058Aegilops tauschiiHelianthus annuus5.2328.7910076forward
CNT30107453Aegilops tauschiiOryza longistaminata5.1628.398.6775reverse complement
CNT3035140Aegilops tauschiiCucumis melo5.3631.7198.7278reverse complement

Expression of CNT30435670

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVNVLRSYLTGDGEILYDIPVPSFSSAHVSIKISSCLPMFM*

>peptide 2 (41 aa)
MLADVHVTTLHFSDYDSCRFCCMHHYHALGVLPPSGFIRSE*

>peptide 3 (60 aa)
MPDGSAAESPHPRRDLVNPSMKSLTETKLLSRANLPIGHTMCSYGQRSQELPDWRWRDFV*

>peptide 4 (59 aa)
MEEPSNHHARWIRSRKSASPQRSRESEHEVSHRNEAPFQSKPPYWSHYVQLWSTFSGAT*

>peptide 5 (40 aa)
MEDPSNPIWAATASARHGGTIQPPCPMDPQQKVRIPAEIS*

>peptide 6 (41 aa)
MPSPGWHFFLILCNLVTCMVFGPVSLVNGVNLFSFLIRFPL*

>peptide 7 (31 aa)
MTCKARLAQLVERKALNLVVVGSSPTVGDTPF

>peptide 8 (35 aa)
MERFCMIFPCHPLVQLMFQLKSLHACRCSCNDFTF*

Sequence

>CNT30435670
TAGCACCGTCGTGTGCCTCCCCTCCACGATCGAAATAGACCCGCCGGCAGCGCGGGTGCTACTCCCCTAGGGCTTGTCCAGTAGTGCAAGCGTGGGCTCG
AGCCTCGTGCTCTGTCCCTCCCAGTCTCTCCGGCAATTGGCAAAGAATCCTCTCGCTTCCGCGGCACCCCATTGGCAAGACTTGGAGCCGTGCGGCCGCG
GACAGGCAAAATCTTGGCGTGGGGAGTACGAAGAATCGGAGCTTGCTTGGCATCGTCATGGAGGATCCATCCAACCCGATCTGGGCGGCAACTGCCAGTG
CCAGACATGGAGGAACCATCCAACCACCATGCCCGATGGATCCGCAGCAGAAAGTCCGCATCCCCGCAGAGATCTCGTGAATCCGAGCATGAAGTCTCTC
ACAGAAACGAAGCTCCTTTCCAGAGCAAACCTCCCTATTGGTCACACTATGTGCAGCTATGGTCAACGTTCTCAGGAGCTACCTGACTGGAGATGGAGAG
ATTTTGTATGATATTCCCGTGCCATCCTTTAGTTCAGCTCATGTTTCAATTAAAATCTCTTCATGCTTGCCGATGTTCATGTAACGACTTTACATTTTAG
TGACTACGATTCATGTAGGTTCTGTTGCATGCACCATTACCATGCCTTGGGAGTACTACCTCCGTCCGGGTTTATTAGGTCCGAGTAGTGAGAAGTAGTG
TTGTAACGAGGTATATGTAAACTTATGGTGGAGGCATTCCTTGCCTTTCTTCTTTAATATATAATGTGCACATTCGTGCATATTCGAGAAAAATAAATAT
TTTGAGCCAAACTTTCATCATTCATATGACTAACAAAATATAGATTCTATGCTACAAAAAGTACACTATTGGATTGGATTTGTATTTGAAAGAGCTTTTT
GAAGGTATAATTTTTATGATATATACTTGTGTCTCTCGTGGTGTTGATCTTTCTGCCTGCTAGCTAGGTCATGCCCTCTCCTGGGTGGCACTTTTTTCTC
ATCTTATGTAACCTTGTTACCTGTATGGTTTTCGGCCCAGTTTCCCTCGTAAACGGGGTCAACTTGTTTAGCTTTTTGATCCGGTTTCCCTTATAAACTG
GATCAGCCAAAGCTTAAGGGGTGACTCTTGGCTTTGGCCGCTTTTTGAGCAATATATTCAGATAGGGATCCTCTCCCCCCTGTGACCATTCAATAAAAAA
TGATATATAGTTTACATTTTATTAGTTAAATTTGTTGGTCAAATTTTAGCCCAAAATGAGAGAGGGCCTACTAAATCCGGACGGAGGTAGTATTTTTGTT
AGTGGTGGCTGTTCCATTTTGCTTTAGTTACTTAGGTCTATACTGTAAACGTGGAAATGACATGCAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGC
TCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGATACACCATTTTT