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Detailed information on CNT30435662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678101Aegilops tauschiiSetaria viridis46.3942.0596.62148forward
CNT3019929Aegilops tauschiiCitrullus lanatus37.327.4288.24119forward
CNT30629265Aegilops tauschiiVigna unguiculata59.5616.7889.47190forward
CNT30196331Aegilops tauschiiPisum sativum56.1112.0689.39179forward
CNT30286472Aegilops tauschiiTriticum aestivum59.5681.2100190forward
CNT30237533Aegilops tauschiiBrassica oleracea58.9312.7689.36188forward
CNT30257651Aegilops tauschiiAvena sativa59.5633.7596.84190forward
CNT30360303Aegilops tauschiiLactuca sativa59.2536.4291.53189forward
CNT30480921Aegilops tauschiiChara braunii51.4121.5884.76164forward
CNT30434475Aegilops tauschiiPapaver somniferum57.0547.489.01182forward
CNT30121217Aegilops tauschiiCitrus clementina59.5621.1888.42190forward

Expression of CNT30435662

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SRLVSPSVQTVVHVPVEDSAATAAPASSGGTPG*

>peptide 2 (68 aa)
IKTGKSISPNSCPCTSRRFGSYCSPCFFGRNPRLRTYSECCQDISILSFILWGVVSQFIIFNTLILHR*

Sequence

>CNT30435662
GATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCAGCCCCTGCTTCTTCGGGCGGAACCCCAGG
CTGAGGACTTACTCGGAATGCTGCCAAGATATCAGTATCCTTAGTTTCATACTCTGGGGTGTAGTAAGTCAATTTATAATCTTTAACACCCTAATACTCC
ATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCCTTTTTAATAGATTCGGCGCGTGCAATTTCT
TTTCCTCCGAGACGACCCC