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Detailed information on CNT30435419


BLAST search results

BLAST vs Swiss-Prot:
sp|P25875|RR16_HORVU, E-value = 1e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690838Aegilops tauschiiOryza sativa94.9745.4588.8830forward
CNT30277302Aegilops tauschiiChenopodium quinoa27.5742.2886.31241forward
CNT30727992Aegilops tauschiiCorchorus capsularis25.9734.9290.31227forward
CNT30610242Aegilops tauschiiGossypium raimondii25.0653.1689.5219forward
CNT30655380Aegilops tauschiiRosa chinensis24.626.1689.77215forward
CNT30424174Aegilops tauschiiPapaver somniferum25.6343.1690.18224forward
CNT3058916Aegilops tauschiiAmborella trichopoda26.0911.0986.84228forward
CNT30576782Aegilops tauschiiOryza barthii94.9780.988.8830forward

Expression of CNT30435419

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDGIMNSHWFSFFILIKTCYLWSNMDKRK*

Sequence

>CNT30435419
CGAAGTGTAGGCGGAAAAATTGAATATGGAGTGAGGATAAAGAGACCCATCTATCTACAAATTCTATTTGTTCAATAGACCTTTGTCAATGGAAATACAA
TGGTAAGAAAACAAATTAGATAGAAAAAGTAAATAAAATAGGGGCTTATGTTGAATTGGCACGATATAATATAAATCCAAATAGGATTAAAAAAGAGGTA
AATTGTGTCTAAATAATTAGACAACTAGGAATACTAATAATCTTCTCCTATCCTACTTTTTGATTCATTTAGTTCTTCAATTAACTCAAAGTTCTTTCTT
TTTCTTTAAAGAATTCCGCCTTCCTTAAAATATCATAAACAGTTCTTGTTGGTTGAGCACCCTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACA
AGTTTGATTCTTTATCGGATCATAAAAACCTACTTTTTGAAGATCTCTTCCTTCTCTTCGAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTGT
TGCTTTCTACCACATCGTTTTAAACAAAGTTTTACCATAACAAACATTCCTCTTTTCATTGCAAAGTGGTATAGAGAATTGATCCAATATGGATGGAATC
ATGAATAGTCATTGGTTTAGTTTTTTTATACTAATTAAAACTTGCTATCTATGGAGCAATATGGATAAAAGAAAGTAAGTATTTATCTGGGAAGCCTCCG
CCAAGATCCAATTTATTTAAACCCATATTAAAATTCTATCATATGAATGAAACATAGTTTGAAAAAGACGACTAAACAAGTTTGCTTAAAACTTATTTAT
TCTTAAATTTCCACCCTCAACGGATGGCTCGAGATGATCAATCTTGAAGTGAGAAAAGAAGGATCGACTCTTCC