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Detailed information on CNT30435366


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Aegilops tauschiiOryza sativa23.7411.2790.74108forward
CNT30673198Aegilops tauschiiSetaria viridis23.7447.3789.81108forward
CNT30521234Aegilops tauschiiSetaria italica23.7414.9489.81108forward
CNT30178026Aegilops tauschiiSecale cereale33.1927.06100151forward
CNT30220389Aegilops tauschiiHordeum vulgare51.4353.5588.46234forward
CNT30384456Aegilops tauschiiTriticum turgidum33.1928.2299.34151forward
CNT30591852Aegilops tauschiiMusa acuminata18.4620.1484.5284forward
CNT30240211Aegilops tauschiiAvena sativa50.7781.6391.34231forward
CNT30656408Aegilops tauschiiTriticum dicoccoides46.5954.593.4212forward
CNT30130322Aegilops tauschiiLolium perenne33.1918.5796.03151forward
CNT3011150Aegilops tauschiiZea mays23.7412.7787.04108forward
CNT30679308Aegilops tauschiiTriticum urartu33.1923.05100151forward
CNT30720193Aegilops tauschiiTriticum spelta67.4756.23100307forward
CNT30370255Aegilops tauschiiOryza glumipatula23.7416.9590.74108forward
CNT30149479Aegilops tauschiiBrachypodium distachyon30.1135.5891.24137forward
CNT30101773Aegilops tauschiiOryza rufipogon23.7413.1190.74108forward
CNT30582819Aegilops tauschiiEchinochloa crusgalli20.4411.1489.2593forward
CNT30496965Aegilops tauschiiDigitaria exilis23.7431.7688.89108forward
CNT30116717Aegilops tauschiiOryza nivara23.7413.1490.74108forward
CNT30604129Aegilops tauschiiOryza punctata23.7417.2289.81108forward

Expression of CNT30435366

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LNSQYSKNMVQKPVRSNHRRANDLVIACTMHAASFQLLIRSTTIKYQQNT*

>peptide 2 (51 aa)
MHHARSIFPITDTKYNDQVSTEHIDRGDPSDQMRSMVHKHEARRGKKKDGI*

Sequence

>CNT30435366
TTTAAACAGCCAGTACAGCAAAAACATGGTACAAAAACCAGTACGTAGCAATCATCGAAGAGCAAATGATCTAGTAATTGCATGCACCATGCACGCAGCA
TCTTTCCAATTACTGATACGAAGTACAACGATCAAGTATCAACAGAACACATAGATAGGGGAGATCCATCAGATCAGATGAGATCCATGGTACACAAGCA
CGAGGCGAGACGAGGGAAGAAGAAGGATGGGATTTAGATCTTGCCGCGTGGTCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCG
GGGGAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTAGGGCGACGCCGCGTCGCTGCCGTACAGGTCCCACTGCCCCGTCGTGTTGG
CGATGTCGTCCAGGTCGAAGTAGACGCTCTTCTCCCCGTACTTGGCCACCACCGC