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Detailed information on CNT30435093


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30135596Aegilops tauschiiLolium perenne55.876.1495.77284forward

Expression of CNT30435093

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QQNKIRDALFHRDRFHFQQHMRTTLFHDSVRTTEQIEN*

>peptide 2 (35 aa)
SRTKSETRCFTETGSISSNTCEQLCSTIQFELQSK*

>peptide 3 (70 aa)
AAEQNQRRVVSQRQVPFPATHANNFVPRFSSNYRANRELNKSLFYKAFGTCRGGEEEPSRRSRRGCVPGA*

>peptide 4 (69 aa)
MSPEMRFTPPRRARRRMAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDMADRSLLGSSCERMEVEERW

Sequence

>CNT30435093
GCAGCAGAACAAAATCAGAGACGCGTTGTTTCACAGAGACAGGTTCCATTTCCAGCAACACATGCGAACAACTTTGTTCCACGATTCAGTTCGAACTACA
GAGCAAATAGAGAACTGAACAAGTCGCTGTTCTATAAAGCTTTTGGGACCTGCAGGGGAGGCGAGGAAGAGCCTAGCCGCCGAAGCCGTAGAGGGTGCGT
CCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGA
TGAGCCCCGAGATGCGCTTCACGCCTCCACGGCGAGCCAGACGGCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCGGTGGCG
CTTGGCGCCGCCCTTGCCAAGCCCCTTGCCTCCCTTGCCGCGCCCAGACATGGCTGACAGATCTCTCCTTGGTTCGAGCTGCGAGCGGATGGAGGTCGAG
GAGCGGTGG