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Detailed information on CNT30434913


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286278Aegilops tauschiiTriticum aestivum21.1254.11100158reverse complement
CNT30383525Aegilops tauschiiTriticum turgidum24.226.7496.13181forward
CNT30255044Aegilops tauschiiAvena sativa12.1721.2696.791reverse complement
CNT30655558Aegilops tauschiiTriticum dicoccoides23.1345.5391.91173reverse complement
CNT30679209Aegilops tauschiiTriticum urartu16.8429.8697.62126reverse complement
CNT30719808Aegilops tauschiiTriticum spelta23.1340.6191.91173reverse complement
CNT30595554Aegilops tauschiiOryza meridionalis9.8928.3589.1974reverse complement
CNT30369218Aegilops tauschiiOryza glumipatula9.8920.3389.1974reverse complement
CNT30557095Aegilops tauschiiPanicum hallii10.8326.4792.5981reverse complement

Expression of CNT30434913

Peptides detected in this lncRNA

>peptide 1 (32 aa)
APGLFIGPLLAFFLLTKQAHQPPQSSQHPLSP*

>peptide 2 (33 aa)
MRRTSKQAPSPPVHHHPAYHHQPPHALARARAE*

>peptide 3 (89 aa)
MDWPDSACAGAPAGSRRPGRPAAATAPPASAAPRAAAPAAAATEPAPRRPAGRGEHEDEEDKQASTITTSSPPPSVSSPAAACARARAR*

>peptide 4 (98 aa)
RARPIYRPPPRLLPPHQASTPASSVLTASSQSLASFPRRHPPRKGGCLAAAATAGAAPAASAATAAAGARCSPTWRPPPAPPPWSCPPPPTRGTYRAN*

>peptide 5 (47 aa)
MRSRARALNKIKPPFVFRSSVCPCRVCSTSTVLPHASTSNEYMAPQL*

>peptide 6 (67 aa)
MSCCGGNCGCGAGCKCGNGCGGCKMFPDVEATAGAAAMVMPTASHKGYVSRQLINRACSTENMHMDL*

Sequence

>CNT30434913
CGCGCCCGGCCTATTTATAGGCCCCCTCCTCGCCTTCTTCCTCCTCACCAAGCAAGCACACCAGCCTCCTCAGTCCTCACAGCATCCTCTCAGTCCTTAG
CTTCCTTCCCTCGCCGCCACCCACCAAGGAAAGGAGGATGTCTTGCTGCGGCGGCAACTGCGGGTGCGGCGCCGGCTGCAAGTGCGGCAACGGCTGCGGC
GGGTGCAAGATGTTCCCCGACGTGGAGGCCACCGCCGGCGCCGCCGCCATGGTCATGCCCACCGCCTCCCACAAGGGGTACGTATCGCGCCAACTAATTA
ACCGCGCTTGTTCAACTGAGAACATGCATATGGATCTCTGACTGACTGGTGGATGGACTGGCCTGACTCTGCTTGTGCAGGAGCTCCGGCGGGTTCGAGA
CGGCCGGGGAGACCGGCGGCTGCGACTGCACCACCTGCAAGTGCGGCACCGCGTGCGGCTGCTCCTGCTGCAGCTGCAACTGAGCCGGCGCCCAGGAGGC
CGGCCGGCAGAGGCGAGCACGAGGATGAGGAGGACAAGCAAGCAAGCACCATCACCACCAGTTCACCACCACCCAGCGTATCATCACCAGCCGCCGCATG
CGCTCGCGCGCGCGCGCGCTGAATAAAATAAAACCACCGTTCGTGTTCCGTAGTTCTGTATGCCCCTGTCGCGTGTGTTCGACCAGTACTGTCCTTCCTC
ATGCCTCCACTTCTAATGAATATATGGCGCCTCAACTTTGAATGATCT