« Back to Papaver somniferum search


Detailed information on CNT30434589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067373Papaver somniferumLeersia perrieri31.5777.1593.99233forward

Expression of CNT30434589

Peptides detected in this lncRNA

>peptide 1 (74 aa)
TTYALVKPPRPDLPTLKEFHLLSIKKGRSATYCSRKDPTYSQVAFXXXXYVPLIGLKVKVAKKWRIAFETNELG*

>peptide 2 (45 aa)
MIVRPWCKSRAQLTRETLRLGSTVAKPKLKGIYGGLHKRWSMWFN*

>peptide 3 (40 aa)
DYLRAGKTTSTGSTDLERIPPAFHKEGEICYLLLTEGSDL*

>peptide 4 (37 aa)
MNLGKIEESGISCVGVKSGDLRRKAKSEGSSLGLYRR*

Sequence

>CNT30434589
GACTACCTACGCGCTGGTAAAACCACCTCGACCGGATCTACCGACCTTGAAAGAATTCCACCTGCTTTCCATAAAGAAGGGGAGATCTGCTACTTACTGC
TCACGGAAGGATCCGACTTATAGTCAAGTCGCCTTCNNNNNNNNNNNATACGTGCCGCTCATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGATTG
CTTTTGAAACCAATGAACTTGGGTAAGATAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGCCAAAAGCGAAGGCA
GCTCTCTGGGTCTCTACCGACGCTGATGTGCGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCT
TGNNNNNNNNNNNAATGGGGAGCAAACATGATTAGATACCCTGGTAGTCCATGCCATAAACGATGATTGTTCGCCCTTGGTGCAAATCAAGGGCCCAGCT
AACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAAACCAAAACTCAAAGGAATTTACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTAG
ATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACTAGACTGTCCTTAATGGGATGGTACTGACTTTCATACAGGTGCTGCATGGATGTCGTCAG
CTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAG