Detailed information on CNT3043430


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Prunus dulcisOryza sativa9.7221.2598.2858reverse complement
CNT30467175Prunus dulcisSaccharum spontaneum10.0525.6498.3360forward
CNT3067939Prunus dulcisLeersia perrieri10.7222.2298.4464reverse complement
CNT30207452Prunus dulcisHelianthus annuus10.2221.8696.7261forward

Expression of CNT3043430

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LPTLHCLSHIAHLPFFIFIGRLPKKESKGFSLASSP*

>peptide 2 (37 aa)
MRNPWCSYFYLSATFPNLSMKFDFFFLKISWFSLMKL*

>peptide 3 (47 aa)
AANPSLPLAHSASPIFHLHRTTSEEGEQRFQSRFVAMRAKVQLKSKP*

Sequence

>CNT3043430
CGCTGCCAACCCTTCACTGCCTCTCGCACATAGCGCATCTCCCATTTTTCATCTTCATCGGACGACTTCCGAAGAAGGAGAGCAAAGGTTTCAGTCTCGC
TTCGTCGCCATGAGAGCCAAGGTACAACTAAAATCAAAACCCTAATAGAAACTTCAAATTGTTTACGTCTATACATCGTCGTTCTTGTGTTTTTGTTGAA
AAGTGTTTTTTTTTTCTGATAAGCTTATCAAAGAATGCCATAGCTTCCGATCCTTGAAAAATGAAATTGATATAAATGGTAAAATGTGCTGCAGTGGAAG
AAGAAGCGCATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCTAAGTGATAGCTTCAGCTGTGCAGCTCTTTCGCATGGCGTTTCTATC
TTTAGGCTTTTGAGTTTTGTCAGACTTAGTGGTTTGTTAGAATTAATATGAGAAACCCTTGGTGTTCTTATTTCTATCTTTCTGCTACATTTCCTAATCT
TTCAATGAAATTTGACTTTTTTTTTTTAAAAATTAGTTGGTTTAGTTTGATGAAATTATGAATTTACATGTTGCTAATTGGAATGTGGTTTCTGAAA