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Detailed information on CNT3043425

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315343	Prunus dulcis	Corylus avellana	28.62	41.22	89.2	176	forward
CNT30516813	Prunus dulcis	Juglans regia	25.85	10.37	89.94	159	forward
CNT30698212	Prunus dulcis	Quercus lobata	27.8	25.83	88.3	171	forward
CNT30275131	Prunus dulcis	Chenopodium quinoa	20.33	10.48	86.4	125	forward
CNT30729814	Prunus dulcis	Corchorus capsularis	27.8	20.93	87.72	171	forward
CNT3069543	Prunus dulcis	Quercus suber	27.8	21.98	87.72	171	forward
CNT30402626	Prunus dulcis	Beta vulgaris	21.14	13.33	88.46	130	forward
CNT30235661	Prunus dulcis	Brassica oleracea	20.81	27	82.03	128	forward
CNT30508764	Prunus dulcis	Solanum lycopersicum	17.07	21.3	85.71	105	forward
CNT3061002	Prunus dulcis	Arabidopsis lyrata	20.81	23.15	81.25	128	forward
CNT30598132	Prunus dulcis	Fraxinus excelsior	20.33	19.97	87.2	125	forward
CNT30360842	Prunus dulcis	Lactuca sativa	20.33	18.88	85.6	125	forward
CNT30112641	Prunus dulcis	Ficus carica	21.46	11.35	88.64	132	forward
CNT3050332	Prunus dulcis	Cucumis sativus	22.93	29.81	85.82	141	forward

Expression of CNT3043425

Peptides detected in this lncRNA

>peptide 1 (61 aa)
KTCEMRWVCESSREEEKWDSETQTTWFGQLPSQNLSLSPLPSVAWQWHGSLAPIQSNQLLR*

>peptide 2 (56 aa)
MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFIFYNGSRYVTEFCKRHLW*

Sequence

>CNT3043425
AAAACGTGTGAGATGAGATGGGTTTGCGAATCAAGCAGAGAAGAGGAGAAGTGGGATAGTGAAACTCAAACAACCTGGTTTGGGCAATTGCCATCTCAAA
ACCTCTCTCTGTCTCCCCTTCCCTCCGTCGCTTGGCAGTGGCACGGTTCATTGGCTCCAATCCAATCCAACCAGCTGCTGCGCTGAACTCAGCCTTTACT
TCTTTGCCACTGATTCTCGAGCCATGAATTGGGTTCAACGAAAGATTTATCTTTACAATGTCACTTTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTA
TCTCTTCAATACTTTGGTCGTTGTGTTGATGTGGTTCATTTTTTACAATGGCTCACGATATGTAACGGAGTTTTGCAAGAGGCATCTATGGTGACGCGTA
GAGCTAGCACCAACCCAGAAGGTTCAAATGTAATGATTGAATGAAGATTTGAATTCAGCTGCAGCATGTATTACACTCAGTATTTATATTTGACTTGTGA
AAATTGTTGATTTTGTGACAGCAATTGTGTATGTACTGCCCTTTTTGTACACCATCTTCTCATGTTATAGGCTTATGTTTCTCTTAATATATCTGATAGC
TTTGGCTTTTACCCC