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Detailed information on CNT30434125


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT002216, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30588198Papaver somniferumMusa acuminata75.4210094.84853reverse complement
CNT30599378Papaver somniferumFraxinus excelsior61.45100.1496.98695reverse complement
CNT30369029Papaver somniferumSorghum bicolor94.3466.8595.51067reverse complement
CNT30497763Papaver somniferumDigitaria exilis70.9193.2696.88802reverse complement
CNT30117001Papaver somniferumOryza nivara86.1261.6596.41974reverse complement

Expression of CNT30434125

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPTRDRRMLLLGLRRHLMRNQSFWVPGGVWSQG*

>peptide 2 (68 aa)
MINRDSRGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNEIGGSKTIRYRPSLNHKRCRPGIGGCCF*

>peptide 3 (61 aa)
VVSPFYRRCVPSLNWPGRASGAVTLKKLECSKQAQALDTLAWDNIIGFRSYCVGLRDRSND*

>peptide 4 (35 aa)
MGGGAWPFLVGGAICLVNSVNERDLSLLTRWTMAV*

Sequence

>CNT30434125
GTCGTCTCTCCCTTCTACCGGCGATGCGTTCCTAGCCTTAATTGGCCGGGTCGTGCCTCCGGTGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAG
CCCAAGCTCTGGATACATTAGCATGGGATAACATCATAGGATTTCGGTCCTATTGCGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGG
GGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGA
AATTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTTTAGGACTCCGCCGGCACC
TTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCG
GCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGG
CCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGATGGACTATGGCCGTTTAGGACACGGAAG
TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATTCAACGAGTATATAGCCTTGGCCGACAGGCCC
GGGTAATCTTTTTAAAGTGCATCGTGATCGGGCTAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTG
ACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGCTGGCGGTTCGCCGCCGG
TGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACC
TGCCCAGCAGAACGACCCGCGAACACGTGAA