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Detailed information on CNT30433323


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 5e-145

BLAST vs NONCODE:
NONPOPT002020, E-value = 3e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728062Papaver somniferumCorchorus capsularis41.9852.5882.1458forward
CNT30291318Papaver somniferumTriticum aestivum23.2876.2879.13254forward
CNT30442409Papaver somniferumAegilops tauschii28.9647.1681.65316forward
CNT30252641Papaver somniferumAvena sativa45.160.5280.49492forward
CNT30261872Papaver somniferumBrassica rapa42.852.7780.51467forward
CNT30608822Papaver somniferumGossypium raimondii36.5759.5579.7399forward
CNT30209019Papaver somniferumHelianthus annuus51.3367.0782.68560forward
CNT30627268Papaver somniferumDaucus carota40.5135.784.16442forward
CNT30722476Papaver somniferumTriticum spelta28.9647.2382.28316forward
CNT30341625Papaver somniferumEragrostis tef56.2862.9780.62614forward
CNT30369350Papaver somniferumOryza glumipatula30.8948.4981.01337forward
CNT30706519Papaver somniferumPrunus avium29.8839.3283.13326forward
CNT30322043Papaver somniferumAsparagus officinalis4558.6679.84491forward
CNT30575061Papaver somniferumOryza barthii30.8937.0781.01337forward

Expression of CNT30433323

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSKTFSLFILLMKFFIFVLTIFFIISSCILVLLVL*

>peptide 2 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVELPIKVEAILRPEGGISQTVDLTLFGIHSTK*

>peptide 3 (31 aa)
MSSLLIIMITRTLLIIMITRTAPTAKQITAS*

>peptide 4 (31 aa)
MQESFSPKHSSKLFTNSAEHFLDGSGITNKS*

Sequence

>CNT30433323
TAATAAACTACGTTTACCATATAAATTTGGTATTTCAGAAAAAATAAAACTTTTTTCATCGTTTTGACTTTGACCAAATAAAACTTTTTTCATCATTTTG
ACTTTGACCAGACATGGACCAAAATTTATCAAATTTGTTTTCCTCCTCAAATTCATTTTCCACCTCCTATTAACGGGACTCGAACTAAAACAATAAGAAC
GCAAAAGGATGGAGCAAACCACAGCAAATTAAACTCGCAAACTAACTAATGTCGTCTTTGCTAATAATCATGATTACCAGAACTTTGCTAATAATCATGA
TTACCAGAACTGCTCCGACAGCAAAACAAATCACAGCATCCTAAGCTTAACAAATGCAACATTGCAAGAAACTGGAAATTGCAGCATTGAAATGAGCAAG
ACATTCTCACTGTTCATACTCCTCATGAAGTTCTTCATCTTCGTACTCACCATCTTCTTCATCATCAGCAGTTGCATCTTGGTATTGCTGGTACTCTGAG
ACCAAATCGTTCATGTTGCTCTCAGCTTCAGTGAATTCCATCTCATCCATACCTTCACCAGTGTACCAATGCAAGAAAGCTTTTCTCCTAAACATAGCAG
TAAACTGTTCACTAACTCGGCGGAACATTTCTTGGATGGAAGTGGAATTACCAATAAAAGTTGAAGCCATCTTAAGACCAGAGGGTGGTATATCACAAAC
AGTCGACTTAACATTGTTTGGAATCCATTCAACGAAGTAAGATGAGTTCTTGTTTTGGACATTCATCATTTGCTCATCAACTTCTTTGGTACTCATTTTG
CCACGGAACATAGCGGAAGCAGTTAAGTAACGTCCGTGCCTGGGGTCAGCAGCACACATCATGTTCTTTGATTCCCACATCTGCTGGGTTAGCTCAGGTA
CACTTAGTGCTGCGTATTGCTGAGATCCGCGGGATGTCAGGGGAGCAAATCCAACCATGAAGAAGTGAAGACGAGGAAATGGAATCAAGTTAACTGCAAG
CTTCCGCAGATCAGAGTTCAATTGGCCAGGAAATCTCAAACAGCAGGTTACACCAGACATTGTTGCGGATATCAAATGGTTCAAATCTCCA