« Back to Papaver somniferum search


Detailed information on CNT30433292


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 3e-98

BLAST vs NONCODE:
NONPOPT000063, E-value = 8e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Papaver somniferumSetaria viridis29.142.0781.97305forward
CNT30522155Papaver somniferumSetaria italica18.2321.7380.63191forward
CNT30641074Papaver somniferumNymphaea colorata18.2352.0481.15191forward
CNT30534291Papaver somniferumEucalyptus grandis17.0828.187.71179forward
CNT30377201Papaver somniferumArabidopsis thaliana54.3999.6582.81570forward
CNT30728063Papaver somniferumCorchorus capsularis37.645.3982.49394forward
CNT30381383Papaver somniferumManihot esculenta31.6818.981.63332forward
CNT30402401Papaver somniferumBeta vulgaris23.6620.8883.06248forward
CNT30196370Papaver somniferumPisum sativum41.3245.4482.68433forward
CNT30223001Papaver somniferumHordeum vulgare10.539.5784.55110forward
CNT30390564Papaver somniferumTriticum turgidum17.6560.8684.86185forward
CNT30542792Papaver somniferumBrassica napus24.5259.2282.88257forward
CNT30511260Papaver somniferumSolanum lycopersicum14.2236.9788.59149forward
CNT30614070Papaver somniferumArabis alpina37.428.3684.95392forward
CNT305432Papaver somniferumZea mays16.8948.2388.7177forward
CNT3041960Papaver somniferumChlamydomonas reinhardtii9.6429.6284.16101forward
CNT30368415Papaver somniferumSorghum bicolor32.5433.1482.11341forward
CNT30595966Papaver somniferumOryza meridionalis18.2331.1680.1191forward
CNT30570854Papaver somniferumVitis vinifera13.9372.6484.93146forward
CNT3033661Papaver somniferumTheobroma cacao17.3787.583.52182forward
CNT3036150Papaver somniferumCucumis melo11.9337.0987.2125forward
CNT30332119Papaver somniferumDioscorea rotundata15.9426.386.23167forward
CNT30150001Papaver somniferumBrachypodium distachyon8.7829.1183.792forward
CNT3099978Papaver somniferumOryza rufipogon18.6124.0781.03195forward
CNT3049477Papaver somniferumCucumis sativus14.2252.4687.92149forward

Expression of CNT30433292

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQESFSPKHSSKLFTNSAEHFLDGSGITNKS*

>peptide 2 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVELPIKVEAILRPEGGISQTVDLTLFGIHSTK*

>peptide 3 (35 aa)
MSKTFSLFILLMKFFIFVLTIFFIISSCILVLLVL*

>peptide 4 (31 aa)
MSSLLIIMITRTLLIIMITRTAPTAKQITAS*

Sequence

>CNT30433292
TAATAAACTACGTTTACCATATAAATTTGGTATTTCAGAAAAAATAAAACTTTTTTCATCGTTTTGACTTTGACCAAATAAAACTTTTTTCATCATTTTG
ACTTTGACCAGACATGGACCAAAATTTATCAAATTTGTTTTCCTCCTCAAATTCATTTTCCACCTCCTATTAACGGGACTCGAACTAAAACAATAAGAAC
GCAAAAGGATGGAGCAAACCACAGCAAATTAAACTCGCAAACTAACTAATGTCGTCTTTGCTAATAATCATGATTACCAGAACTTTGCTAATAATCATGA
TTACCAGAACTGCTCCGACAGCAAAACAAATCACAGCATCCTAAGCTTAACAAATGCAACATTGCAAGAAACTGGAAATTGCAGCATTGAAATGAGCAAG
ACATTCTCACTGTTCATACTCCTCATGAAGTTCTTCATCTTCGTACTCACCATCTTCTTCATCATCAGCAGTTGCATCTTGGTATTGCTGGTACTCTGAG
ACCAAATCGTTCATGTTGCTCTCAGCTTCAGTGAATTCCATCTCATCCATACCTTCACCAGTGTACCAATGCAAGAAAGCTTTTCTCCTAAACATAGCAG
TAAACTGTTCACTAACTCGGCGGAACATTTCTTGGATGGAAGTGGAATTACCAATAAAAGTTGAAGCCATCTTAAGACCAGAGGGTGGTATATCACAAAC
AGTCGACTTAACATTGTTTGGAATCCATTCAACGAAGTAAGATGAGTTCTTGTTTTGGACATTCATCATTTGCTCATCAACTTCTTTGGTACTCATTTTG
CCACGGAACATAGCGGAAGCAGTTAAGTAACGTCCGTGCCTGGGGTCAGCAGCACACATCATGTTCTTTGATTCCCACATCTGCTGGGTTAGCTCAGGGG
AGCAAATCCAACCATGAAGAAGTGAAGACGAGGAAATGGAATCAAGTTAACTGCAAGCTTCCGCAGATCAGAGTTCAATTGGCCAGGAAATCTCAAACAG
CAGGTTACACCAGACATTGTTGCGGATATCAAATGGTTCAAATCTCCA