Detailed information on CNT304322


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Zea maysArabidopsis thaliana44.1328.5785.71252forward
CNT30282434Zea maysChenopodium quinoa41.869.7484.52239forward
CNT30402836Zea maysBeta vulgaris22.9413.5686.26131forward
CNT30631186Zea maysVigna unguiculata47.4623.9284.87271forward
CNT30712266Zea maysGlycine max12.6126.2890.2872forward
CNT30635894Zea maysCapsicum annuum23.9924.3389.05137forward
CNT3094731Zea maysSolanum tuberosum32.0512.1985.25183forward
CNT30187559Zea maysSecale cereale30.8226.3989.77176forward
CNT30298345Zea maysTriticum aestivum44.3135.9489.72253forward
CNT30394033Zea maysTriticum turgidum44.3118.789.72253forward
CNT30560520Zea maysActinidia chinensis30.4754.8985.06174forward
CNT30510308Zea maysSolanum lycopersicum21.8948.4588.8125forward
CNT30441217Zea maysAegilops tauschii47.6436.6189.34272forward
CNT30314068Zea maysCamelina sativa44.1316.6282.94252forward
CNT30227528Zea maysAnanas comosus31.3524.6288.27179forward
CNT30625469Zea maysDaucus carota45.1817.2583.33258forward
CNT30352420Zea maysEragrostis tef47.2943.6288.89270forward
CNT30477326Zea maysArabidopsis halleri26.817.3184.97153forward
CNT30481150Zea maysChara braunii36.614.7978.95209forward
CNT30704690Zea maysPrunus avium46.0612.9484.79263forward
CNT3055965Zea maysAmborella trichopoda37.6524.7486.05215forward
CNT30323609Zea maysAsparagus officinalis47.1116.1686.62269forward
CNT30149846Zea maysBrachypodium distachyon18.2123.4888.46104forward
CNT30103353Zea maysOryza rufipogon47.8127.1986.45273forward
CNT30577638Zea maysOryza barthii45.3639.9786.87259forward

Expression of CNT304322

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRHLVDLLHLAFTSVVLKLRHLSLCLNRLVLIDAQTEFEHAVDPVAEGVGVIQAEAGAHP*

>peptide 2 (75 aa)
MLRPSLSMRWIRLPKVLGSSRLKPELIHDRVLWVDLHCLFARHVARHARVPQGLCLHDPLHVGGPAILASHKAAR*

>peptide 3 (67 aa)
MLESLRACAFMILSMLAVQPYSPVTRQHGESTTRSDTTTFSTLSPRTSLMTLHSPSNFSFSSSFLFFS

Sequence

>CNT304322
CATAACAGATAAACCAGACTTATAGCCTGGCCAGCAGGACAACCGATAACGTGCCAAAAACCTCGAACAATAGTGAAAATTAAGCTATCACAGGTAGCTT
AGCTAGGGATAAGATAAACGGCAAGCATGCGATGCGACACTTAGTCGACCTCCTCCATCTTGCTTTCACCAGCGTCGTCCTCAAGCTGAGGCATCTCAGC
CTCTGCCTCAACAGGCTCGTCCTCATCGATGCTCAGACCGAGTTTGAGCATGCGGTGGATCCGGTTGCCGAAGGTGTTGGGGTCATCCAGGCTGAAGCCG
GAGCTCATCCATGATAGGGTTCTCTGGGTTGATCTCCATTGTCTTTTTGCTCGACATGTAGCCCGCCATGCTCGAGTCCCTCAGGGCCTGTGCCTTCATG
ATCCTCTCCATGTTGGCGGTCCAGCCATACTCGCCAGTCACAAGGCAGCACGGTGAGTCCACAACGCGATCAGACACCACCACCTTCTCAACTTTGTCAC
CCAGAACCTCCTTGATGACCTTGCACAGCCCCTCAAACTTCTCCTTCAGCTCCTCCTTCCTCTTCTTCTCG