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Detailed information on CNT30427845


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 5e-86

BLAST vs NONCODE:
NONPOPT001132, E-value = 8e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30276117Papaver somniferumChenopodium quinoa20.8928.1286.47207forward
CNT30629147Papaver somniferumVigna unguiculata22.8129.0184.07226forward
CNT30502101Papaver somniferumNicotiana attenuata30.9865.3285.99307forward
CNT3022534Papaver somniferumPopulus trichocarpa23.1170.985.59229forward
CNT3050381Papaver somniferumCucumis sativus17.4655.187.86173forward

Expression of CNT30427845

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MISHESSSTTLRIRTLLSQPLNLSRIINFVELKNRELNLLMLMLDLLWLSIGLLLPLFSSSPQTKNQMKSRFLLNVVIS*

>peptide 2 (38 aa)
YNQSIRTLIIKTPIGANHLISWYKLTNPAGLTGLSGPF*

Sequence

>CNT30427845
TACAATCAAAGCATAAGAACACTGATTATTAAAACCCCTATTGGAGCCAACCATTTAATCAGTTGGTACAAACTCACAAATCCCGCAGGATTGACTGGAC
TGAGTGGTCCTTTTTAGCTTGGTTTCTTGAATCAAAGCATAACAATTAAAGGAACAACTATCATTTAACAACCACCAAAATCAGACTACACCCACAATAA
TCAACAGCAAACATATTCAACCACAATAATCAGATTTGTCAAAATTGAAGCACATAACATAATCTATTCGTAGTGAGTCATAATAATAATCTCCATTTAA
CAAAAGAAAAGGACATAATATCTTATCATAAAAGGTGCTGAAATTGAAATTAACCAACAAGAAAATTCTTTAAATCCCTAAAAACAACCAAATAAGAAAC
CCTCTTAACAAAACTAAATATTACTAAAGAGTAACCACGACTTACTCTTGTCCAGCTTGCTGGTAAACGTAAGTCAAACCACACTTACCGCAGTAGTGAC
GGTCAAAATGATTAGCCATGAAAGTTCCAGCACCACACTCAGAATTAGGACACTCCTTTCTCAACCTCTGAACCTTTCCAGAATCATCAACTTTGTAGAA
CTGAAGAACCGCGAGCTTAACCTTCTTATGCTTATGCTTGATCTTCTTTGGCTTAGTATAGGTCTTCTTCTTCCTCTTTTTAGCTCCTCCCCTCAAACGA
AGAACCAGATGAAGAGTCGATTCCTTCTGAATGTTGTAATCAGCTAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTG
GTGGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCGATCGTATCAGAGGATTCAACCTCGAGGGTGATTGTTTTCCCTGTTAGGGTTTTCAC
GAAGATCTGCATCTTCGCGGAGGCGACTCAAAGTAGGGTTTCTGTTTCTTATCTCTTGCGGTGTGATATGGAAATGAGATTTGAGTTTAGG