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Detailed information on CNT30427756


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677701Papaver somniferumSetaria viridis51.4697.9686.14671forward
CNT30518094Papaver somniferumJuglans regia65.4191.1383.94853forward
CNT3021028Papaver somniferumCitrullus lanatus64.0367.2384.43835forward
CNT30525464Papaver somniferumPhaseolus vulgaris44.1101.7781.39575forward
CNT30564256Papaver somniferumActinidia chinensis47.0952.7584.69614forward
CNT3084148Papaver somniferumVigna radiata43.434.7584.98566forward
CNT30173274Papaver somniferumTrifolium pratense64.2662.386.87838forward
CNT30665783Papaver somniferumTriticum dicoccoides64.1191.7782.42836forward
CNT3077042Papaver somniferumBrassica juncea65.871.2686.48858forward
CNT30608730Papaver somniferumGossypium raimondii34.4374.8385.52449forward
CNT30480841Papaver somniferumArabidopsis halleri30.2163.4587.06394forward
CNT30368495Papaver somniferumSorghum bicolor55.971.5485.32729forward
CNT30706337Papaver somniferumPrunus avium62.7370.1585.57818forward
CNT3024315Papaver somniferumPopulus trichocarpa46.779.8285.22609forward
CNT3037774Papaver somniferumCucumis melo35.8160.4187.79467forward
CNT30176122Papaver somniferumVigna angularis65.0374.9182.19848forward
CNT30113122Papaver somniferumFicus carica37.7359.2883.94492forward
CNT3050294Papaver somniferumCucumis sativus40.5786.384.5529forward

Expression of CNT30427756

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGLVGIILIIPASPFFKNLGSFSSSFPDRLSILVWISANLTAM*

>peptide 2 (49 aa)
MVHDDDLGGEVGSFPGWVILGVGGDETTLEILHCNILDIEPNIVSWKSF*

>peptide 3 (46 aa)
MLSRASRRVGPLYQSRLVDLSIMLSPSNPEIGTKAIFSGLYPTFFK*

>peptide 4 (93 aa)
MMMTWEVKLAASLAGSSLELEATKPRLRSFTATFLTLNPTLSPGRASRRASWCISTDLTSVVKPVGPKVTTIPGLMTPVSTRPTGTVPIPPIL*

>peptide 5 (54 aa)
MLPPPIKHPGLHLDAQQNKGNKRYKTAMIANQSKPETKMTTTEVNKTKPFCRPS*

Sequence

>CNT30427756
ACAAAAGATACGAGTAAAAGACATTTAATAAAGAAAAAAACAAGACATTAACTAGAACACTGTTTTCATTTAACTGGGAAAGAGAGATGCAAATAAAAAG
TTGTTAACAGCAACTTACAAACCAAAATCCATAACAAGTTTTCAATTAACTGAACAGCCCAAACTCATGTTGCCACCGCCTATCAAGCACCCAGGTTTGC
ATCTGGATGCTCAACAAAACAAAGGCAACAAAAGATATAAAACTGCAATGATAGCTAACCAAAGCAAACCAGAAACAAAAATGACTACTACTGAAGTAAA
CAAGACAAAACCATTCTGCAGACCCTCTTAGCACCATCCCTGTACTCACTGGAGTACTTTACTTCTTCTTGACAGCAGACTTGGTAACCTTGGCTCCGGT
TGGGTCCTTCTTCTCAACCCCCTTGATGACACCAACAGCAACTGTCTGCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGATACTGAGCGAAGGTC
TCTACAACCATGGGCTTGGTTGGAATCATCTTAATAATACCAGCATCACCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTTCCAGATCGCCTAT
CGATCTTGGTTTGGATCTCAGCAAACTTAACAGCAATGTGAGATGTGTGACAGTCAAGAACTGGAGCATAACCATTACCAATCTGACCAGGATGGTTCAT
GATGATGACCTGGGAGGTGAAGTTGGCAGCTTCCCTGGCTGGGTCATCCTTGGAGTTGGAGGCGACGAAACCACGCTTGAGATCCTTCACTGCAACATTC
TTGACATTGAACCCAACATTGTCTCCTGGAAGAGCTTCTAGAAGGGCTTCGTGGTGCATCTCCACAGACTTAACTTCAGTGGTCAAACCGGTGGGTCCAA
AGGTAACAACCATACCAGGCTTGATGACTCCAGTTTCAACACGTCCAACTGGCACAGTTCCAATACCTCCAATCTTGTAAACATCTTGAAGGGGAAGACG
AAGGGGCTTGTCTGAGGGTCTCTTTGGCTCAGAGATGTTGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTTTCAATC
ATGTTGTCTCCCTCGAATCCAGAGATAGGAACAAAGGCAATTTTTTCTGGGTTGTATCCAACCTTCTTCAAGTAAGATGAGACCTCCTTGACAATTTCAT
CGTACCTAGCCTTTGAGTACTTGGGGGGGCTTGTCTGAGGGTCTCTTTGGCTCAGAGATGTTGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGT
CAAG