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Detailed information on CNT30427061


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT001751, E-value = 6e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30265127Papaver somniferumBrassica rapa21.8258.4385.23149forward
CNT30116376Papaver somniferumOryza nivara36.4645.8687.15249forward

Expression of CNT30427061

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGLVGIILIIPASPFFKNLGSFSSSFPDRLSILVWISANFTAM*

>peptide 2 (54 aa)
MLPPPIKHPGLHLDAQQNKGNKRYKTAMIANQSKPETKMTTTEVNKTKPFCRPS*

Sequence

>CNT30427061
TTAACTAGAACACTGTTTTCATTTAACTGGGAAAGAGAGATGCAAATAAAAAGTTGTTAACAGCAACTTACAAACCAAAATCCATAACAAGTTTTCAATT
AACTGAACAGCCCAAACTCATGTTGCCACCGCCTATCAAGCACCCAGGTTTGCATCTGGATGCTCAACAAAACAAAGGCAACAAAAGATATAAAACTGCA
ATGATAGCTAACCAAAGCAAACCAGAAACAAAAATGACTACTACTGAAGTAAACAAGACAAAACCATTCTGCAGACCCTCTTAGCACCATCCCTGTACTC
ACTGGAGTACTTTACTTCTTCTTGACAGCAGACTTGGTAACCTTGGCTCCGGTTGGGTCCTTCTTCTCAACCCCCTTGATGACACCAACAGCAACTGTCT
GCCTCATGTCCCTAACAGCAAAACGTCCAAGAGGTGGGTACTGAGCAAAGGTCTCTACAACCATGGGCTTGGTTGGAATCATCTTAATAATACCCGCATC
ACCGTTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTTCCAGATCGCCTATCAATCTTGGTTTGGATCTCAGCGAACTTCACAGCAATGTGAGATGTG
TGACAGTCAAGAACTGGAGCATAACCATTACCGATCTGACCAGGATGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGC