Detailed information on CNT30426941


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727960Papaver somniferumCorchorus capsularis27.9532.1485.09161forward
CNT30380834Papaver somniferumManihot esculenta19.125.8284.55110forward
CNT3047350Papaver somniferumPrunus dulcis11.8129.8288.2468forward
CNT3062349Papaver somniferumArabidopsis lyrata26.2217.3490.07151forward
CNT30721065Papaver somniferumTriticum spelta22.0556.781.1127forward
CNT30364150Papaver somniferumSorghum bicolor18.9228.5384.4109forward
CNT30573622Papaver somniferumVitis vinifera13.3728.3184.4277forward
CNT3034106Papaver somniferumTheobroma cacao10.2428.9288.1459forward
CNT3022287Papaver somniferumPopulus trichocarpa26.2236.7484.77151forward

Expression of CNT30426941

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTFRPVITSTRLTKNEVIGSEDLTKRTRSD*

>peptide 2 (60 aa)
MLSTYYFPKLCSDLITTLTSLNMKNLSHFEFFLGFEANKKFQREREKFRKEERKWEKKRRK

Sequence

>CNT30426941
CCTTGTAAGCAATCACAATTCTCGACTTCTTTTCTGACAACATCAAGAACGGAATCAATCAACTCAGCACCTTCAGTATAATGACCTTTCGCCCAGTTAT
TACCAGCACCAGATTGACCAAAAACGAAGTTATCGGGTCTGAAGATCTGACCAAAAGGACCAGATCTGATTGAATCCATAGTACCAGCACCAGATTGACC
AAAGACGAAGTTATCAGGTCTAAAGATCTGACCAAAAGGACCAGATCTAAGTGAATCCATAGTACCAGGCTCAAGATCCATAAGTACAGCTCTCGGTACA
TATCTACCACAACTTGCTTCGTTGTAATAAACATTGATTCTCTCCAATTGAAGCTCTGAATCGCCTTCATATCTTCCTGTTTGATCTATACCATGCTCAG
CACATACTACTTCCCAAAACTTTGCTCCGATCTGATTACCACATTGACCTCCCTGAATATGAAGAATCTCTCTCATTTTGAATTTTTTCTAGGGTTTGAA
GCGAACAAGAAATTTCAGAGAGAGAGAGAGAAATTTCGAAAGGAAGAGAGAAAGTGGGAAAAAAAGAGGAGAAAAT