Detailed information on CNT3042609


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LU44|SF1_ARATH, E-value = 6e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275523Prunus dulcisChenopodium quinoa29.5318.6583.46127forward
CNT30403830Prunus dulcisBeta vulgaris36.2812.4180.77156forward
CNT30574446Prunus dulcisVitis vinifera37.6718.0885.8162forward

Expression of CNT3042609

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MYKFVSSYSLVGLIPTDPKPGCDDALLALPALLAQGGLLTELLPGPRANVLVCLVA

>peptide 2 (69 aa)
LEEELEDLWPMAHYQCSGIGLQLIQAKTVHACNSIISHLNVCILHKTITFTQSGNPVPNNFGHHNITKR*

>peptide 3 (33 aa)
AGGGTGGFVAHGTLPMLWDWSAVDPGENRSCLQ*

Sequence

>CNT3042609
AGCTGGAGGAGGAACTGGAGGATTTGTGGCCCATGGCACATTACCAATGCTCTGGGATTGGTCTGCAGTTGATCCAGGCGAAAACCGTTCATGCTTGCAA
TAGCATTATTAGCCATTTGAACGTCTGCATACTTCACAAAACCATAACCTTTACTCAATCCGGTAATCCGGTCCCTAATAACTTTGGCCATCACAATATC
ACCAAAAGGTGAAAACAATCGGATCAAACCATCATCATCAAGAGTAGGTGGCAAGTATCCGATGTACAAATTTGTGTCATCGTATTCCTTGGTAGGCTTG
ATTCCAACTGATCCCAAGCCTGGATGTGATGATGCACTGCTAGCACTCCCAGCGCTGTTAGCCCAAGGAGGATTGCTTACTGAACTATTGCCTGGGCCAA
GAGCCAATGTACTGGTCTGCTTAGTTGCAG