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Detailed information on CNT30425595


BLAST search results

BLAST vs Swiss-Prot:
sp|B1A931|PSBC_CARPA, E-value = 1e-119

BLAST vs NONCODE:
NONCSAT000472, E-value = 2e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Papaver somniferumOryza sativa98.841.0889.1578forward
CNT30730376Papaver somniferumCorchorus capsularis38.2956.1491.07224forward
CNT30196209Papaver somniferumPisum sativum45.4749.7287.97266forward
CNT30300556Papaver somniferumTriticum aestivum98.833.8289.45578forward
CNT30542882Papaver somniferumBrassica napus98.2931.8690.61575forward
CNT30441515Papaver somniferumAegilops tauschii95.7387.0989.11560forward
CNT30628236Papaver somniferumDaucus carota38.4620.791.11225forward
CNT30361727Papaver somniferumSorghum bicolor47.8692.1189.64280forward
CNT30109402Papaver somniferumOryza longistaminata98.843.8989.45578forward
CNT30148380Papaver somniferumBrachypodium distachyon70.630.4689.35413forward
CNT30100129Papaver somniferumOryza rufipogon72.9940.6789.7427forward
CNT30116897Papaver somniferumOryza nivara30.9437.7188.95181forward
CNT30557406Papaver somniferumPanicum hallii63.7688.3989.81373forward

Expression of CNT30425595

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSFFSLLKSKPFGPLRGSNQGARRSQKRIVSPPKMTSPVGELIRYLPKPVGP*

>peptide 2 (29 aa)
MGHIFRRTPFLPRLDVFFQPAQVQAIWTP*

>peptide 3 (35 aa)
LSQLRGVMKRTGSKSRSIPFSNPAAAARALPACHK*

>peptide 4 (33 aa)
VSVKRGHEKNRFQITINSFFKSCCSCTSSSRMP*

Sequence

>CNT30425595
CTGTCTCAGTTAAGAGGGGTCATGAAAAGAACAGGTTCCAAATCACGATCAATTCCTTTTTCAAATCCTGCTGCAGCTGCACGAGCTCTTCCCGCATGCC
ATAAATGACCCACGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCGAGGAGAAACATAATTGACTGCATTGATTTCAGTAGCTAC
GCCACCCACGGAATTTAAGGAACCTAAAGGAGCATGGGTCATATATTCCGCAGAACGCCGTTCTTGCCAAGGTTGGATGTCTTTTTTCAGCCTGCTCAAG
TCCAAGCCATTTGGACCCCTTAGAGGTTCCAACCAGGGAGCGCGGAGGTCCCAAAAACGCATAGTTTCTCCTCCAAAAATGACCTCCCCTGTTGGGGAAC
TCATTAGATATTTACCTAAACCGGTAGGTCCTTGAGCGGATCCCACGTTAGCCCCAAGACGTTGGTCTCGAACTAGAAAGGTGAATGCTTGCGCTTGAGA
AGCTTCTGGCCCAGTGGGCCCGTAAAATTCACTAGGATAAGCAGTATTATTGAACCAGACAAAACAACAAGCGATGAAACCAAAG