Detailed information on CNT30424894


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 2e-88

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146188Papaver somniferumMedicago truncatula47.3144.8487.78352forward
CNT3015474Papaver somniferumZea mays50.2765.0486.1374forward
CNT30721805Papaver somniferumTriticum spelta31.5916.2787.66235forward
CNT3024873Papaver somniferumPopulus trichocarpa44.4958.6987.31331forward
CNT30101053Papaver somniferumOryza rufipogon44.8940.1986.23334forward
CNT30580076Papaver somniferumEchinochloa crusgalli52.5529.5587.21391forward
CNT30116111Papaver somniferumOryza nivara44.8938.1785.63334forward

Expression of CNT30424894

Peptides detected in this lncRNA

>peptide 1 (94 aa)
FMMMTWEVKLAASLAGSSFELEATKPRLRSFTATFLTLNPTLSPGRASRRASWCISTDLTSVVKPVGPKVTTIPGLMTPVSTRPTGTVPIPPIL*

>peptide 2 (46 aa)
MLSRASRRVGPLYQSRLVDLSIMLSPSNPEIGTKAIFSGLYPTFFK*

Sequence

>CNT30424894
GGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCTTCCCTGGCAGGGTCGTCCTTTGAGTTGGAGGCGACGAAACCCCGCTTGAGATCCTTCACTGC
AACATTCTTGACATTGAACCCAACATTGTCTCCTGGAAGAGCTTCTAGAAGGGCTTCGTGGTGCATCTCCACAGACTTAACTTCAGTGGTCAAACCGGTG
GGTCCAAAAGTAACAACCATACCAGGCTTGATGACTCCAGTTTCAACACGTCCCACTGGCACAGTTCCAATACCTCCAATCTTGTAAACATCCTGAAGGG
GAAGACGAAGGGGCTTGTCTGAGGGGCTTCGTGGTGCATCTCCACAGACTTAACTTCAGTGGTCAAACCGGTGGGTCCAAAAGTAACAACCATACCAGGC
TTGATGACTCCAGTTTCAACACGTCCCACTGGCACAGTTCCAATACCTCCAATCTTGTAAACATCCTGAAGGGGAAGACGAAGGGGCTTGTCTGAGGGTC
TCTTTGGCTCAGAGATGTTGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTTTCAATCATGTTGTCTCCCTCAAATCC
AGAGATAGGAACAAAGGCAATTTTTTCTGGGTTGTATCCAACCTTCTTCAAGTAAGATGAGACCTCCTTGACAATTTCATCATACCTAGCCTTTGAGTAC
TTGGGGGTGGTGGCATCCATCTACAAACACAAACACAAAACAAG