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Detailed information on CNT30424540


BLAST search results

BLAST vs Swiss-Prot:
sp|P34823|EF1A2_DAUCA, E-value = 3e-115

BLAST vs NONCODE:
NONBNAT001751, E-value = 4e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629544Papaver somniferumVigna unguiculata43.6544.5887.54337forward
CNT30564261Papaver somniferumActinidia chinensis29.480.7891.63227forward
CNT30588666Papaver somniferumMusa acuminata62.4499.1880.71482forward
CNT30100761Papaver somniferumOryza rufipogon63.8686.0484.38493forward

Expression of CNT30424540

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLSRASRRVGPLYQSRLVDLSIMLSPSNPEIGTKAISMVIPRSRSALSLSRTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (75 aa)
LLLKLLSRSPIYLGLDLSKLNSNVRCVTVKNWSITITDLTRMVHDDDLGGDETTLEILHCNILDIEPNIVSWKSF*

>peptide 3 (78 aa)
MMMTWEATKPRLRSFTATFLTLNPTLSPGRASRRASWCISTDLTSVVKPVGPKVTTIPGLMTPVSTRPTGTVPIPPIL*

>peptide 4 (37 aa)
MVSLAQRCCQEPQGELVPCTSQGWWTFQSCYLPRIQR*

Sequence

>CNT30424540
GCTCCTTCTCAAGCTCCTTTCCAGATCGCCTATCTATCTTGGTTTGGATCTCAGCAAACTTAACAGCAATGTGAGATGTGTGACAGTCAAGAACTGGAGC
ATAACCATTACCGATCTGACCAGGATGGTTCATGATGATGACCTGGGAGGCGACGAAACCACGCTTGAGATCCTTCACTGCAACATTCTTGACATTGAAC
CCAACATTGTCTCCTGGAAGAGCTTCTAGAAGGGCTTCGTGGTGCATCTCCACAGACTTAACTTCAGTGGTCAAACCGGTGGGTCCAAAAGTAACAACCA
TACCAGGCTTGATGACTCCAGTTTCAACACGTCCCACTGGCACAGTTCCAATACCTCCAATCTTGTAAACATCCTGAAGGGGAAGACGAAGGGGCTTGTC
TGATGGTCTCTTTGGCTCAGAGATGTTGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTTTCAATCATGTTATCTCCC
TCGAATCCAGAGATAGGAACGAAGGCAATATCAATGGTAATACCACGCTCACGTTCAGCCTTAAGCTTGTCAAGAACCCAAGCGTACTTGAATGACCTCT
TGTTCATCTCAGCAGCCTCCTTCTCGAATCTTTCAATAACACGCTTGTCAATACCTCCAAGCTTGTAGATCAAGTGACCAGTGGTGGTCGATTTACCAGA
GTCGACATGTCCAATGACAACAATATTGATGTGAACCTTCTCTTTACCCATATTGAATTCTTAGAAAATAAC