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Detailed information on CNT30424412


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 9e-145

BLAST vs NONCODE:
NONPOPT002020, E-value = 7e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617295Papaver somniferumSesamum indicum15.442.6886.29175forward
CNT30486254Papaver somniferumOlea europaea6.7820.190.9177forward
CNT30562824Papaver somniferumActinidia chinensis30.1961.6982.8343forward
CNT3024644Papaver somniferumPopulus trichocarpa49.4727.4881.32562forward
CNT30333708Papaver somniferumCynara cardunculus36.1850.7480.54411forward

Expression of CNT30424412

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MQLEVAALKMSKTFSLLILLMKFFIFVLAIFFIISSCILVLLVL*

>peptide 2 (30 aa)
MSSLIIMITRTLLIIMITRTPPTAKQITAS*

>peptide 3 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVELPIKVEAILRPEGGISQTVDLTLFGIHSTK*

>peptide 4 (44 aa)
SPYLMLLSVLHTKVKMIKNNLVFQKKKNFFHHFDFDQIKHFSSF*

Sequence

>CNT30424412
TTTCACCATATTTAATGTTGTTGTCCGTTCTGCATACAAAAGTAAAGATGATAAAGAATAATTTGGTATTTCAGAAAAAGAAAAACTTTTTTCATCATTT
TGACTTTGACCAAATAAAACATTTTTCATCATTTTGACTTTGACCAGACATGGAAATTTGTTTTCCTCCTCAAATTCATTTTTTCCCTCCTATTAACGGG
ACTCAAAACTAAAACTATAAGAACGGAAAAGGATGGAGCAAACCACAGCAAATTAAACTCACGAACTAATATGTCTTCGCTAATAATCATGATTACCAGG
ACTTTGCTAATAATCATGATTACCAGAACTCCTCCGACAGCAAAACAAATCACAGCATCCTAGGCTTAACAAATGCAACATTGCAAATCCTCAAAGAGAA
GGAGATTCAAATGCAACTGGAAGTTGCAGCATTGAAAATGAGCAAGACATTCTCACTGCTCATACTCCTCATGAAGTTCTTCATCTTCGTACTTGCCATC
TTCTTCATCATCAGCAGTTGCATCTTGGTATTGCTGGTACTCTGAGACCAAATCATTCATGTTGCTCTCAGCTTCAGTGAATTCCATCTCATCCATACCT
TCACCAGTGTACCAGTGCAAGAAAGCTTTTCTCCTAAACATAGCAGTAAACTGTTCACTAACACGGCGGAACATTTCTTGGATGGAAGTGGAATTACCAA
TAAAAGTTGAAGCCATCTTAAGACCAGAGGGTGGTATATCACAAACAGTCGACTTAACATTGTTTGGAATCCATTCGACGAAGTAAGATGAGTTCTTGTT
TTGGACATTCATCATTTGCTCATCAACTTCTTTGGTACTCATTTTTCCACGGAACATAGCGGAAGCAGTTAAGTAACGTCCGTGCCTGGGGTCAGCAGCA
CACATCATGTTCTTTGATTCCCACATCTGCTGGGTTAGCTCAGGTACACTTAGTGCTGCGTATTGCTGAGATCCGCGGGATGTAAGGGGAGCAAATCCAA
CCATGAAAAAGTGAAGACGAGGGAATGGAATCAAGTTAACAGCAAGCTTCCGCAGATCAGAGTTCAATTGGCCAGGAAATCTCAAACAGCAGGTTACACC
AGACATTGTTGCGGATATCAAATGGTTCAAATCTCC