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Detailed information on CNT30424174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0G9N7|RR16_LIRTU, E-value = 5e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690838Papaver somniferumOryza sativa44.8912.7690.99233forward
CNT30277302Papaver somniferumChenopodium quinoa62.8157.1984.97326forward
CNT30727992Papaver somniferumCorchorus capsularis59.1547.2389.58307forward
CNT30393155Papaver somniferumTriticum turgidum33.7227.0589.71175forward
CNT30435419Papaver somniferumAegilops tauschii43.1625.6390.18224forward
CNT30659176Papaver somniferumTriticum dicoccoides43.1668.0990.62224forward
CNT30610242Papaver somniferumGossypium raimondii58.9674.2787.91306forward
CNT30229322Papaver somniferumAnanas comosus13.4929.6697.1470reverse complement
CNT30655380Papaver somniferumRosa chinensis61.6638.9390320forward
CNT30127870Papaver somniferumCorymbia citriodora33.1430.8888.95172forward
CNT30685543Papaver somniferumTriticum urartu34.364.9690.45178forward
CNT30151877Papaver somniferumPrunus persica2111.6188.99109reverse complement
CNT3058916Papaver somniferumAmborella trichopoda46.6311.7792.56242forward
CNT30319235Papaver somniferumAsparagus officinalis23.5117.7390.16122forward
CNT30150933Papaver somniferumBrachypodium distachyon31.7962.0389.09165forward
CNT30576782Papaver somniferumOryza barthii44.8922.7190.56233forward

Expression of CNT30424174

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MELIQYGIMNSHWFNRHIVIYTFILSFSIWKGPFFWRSLRKGFNLINPIFYSMSK

>peptide 2 (38 aa)
KKLREVKFTLWNLHFLFLCSLFKVRLINGKFLKHLCLL*

Sequence

>CNT30424174
GAAGAAATTACGGGAAGTTAAGTTCACATTATGGAACCTCCACTTTCTTTTTCTTTGTTCATTATTTAAAGTTCGTTTGATTAACGGGAAGTTCCTTAAA
CACCTCTGCCTTCTTTGAAATATCATGAACGGTTCCTGTGGGTTGAGCGCCTTTTTCAAGGAAATAGAGAATAGCGGGAACGTTTGAATAAGTTTGATTC
TTTATCGGATCGTAAAAACCCACTTTCCGAAGATCTCTTCCTTCTCTTCGGGATCGAACATCAATTGCAACGATTCGATAGATGGCTCGTTGCTTTCTAC
CACATCGTTTTAAACGAAGGTTTACCATAACTTTCCTCTAGTTTGGAGCCGGTATGGAATTGATTCAATATGGAATCATGAATAGTCATTGGTTCAATCG
GCACATAGTAATCTATACTTTCATACTTTCTTTTTCTATATGGAAAGGTCCTTTTTTCTGGAGAAGTCTTCGCAAAGGATTCAATTTAATTAACCCCATC
TTTTATTCTATGAGCAAAA