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Detailed information on CNT30424172


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 3e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Papaver somniferumSetaria italica22.6421.0780.38158forward
CNT30318541Papaver somniferumCorylus avellana32.2347.9782.22225forward
CNT30500451Papaver somniferumCoffea canephora45.8529.9983.12320forward
CNT30277485Papaver somniferumChenopodium quinoa49.8640.884.48348forward
CNT3021362Papaver somniferumCitrullus lanatus57.4561.681.8401forward
CNT30727603Papaver somniferumCorchorus capsularis47.7167.4182.88333forward
CNT30524728Papaver somniferumPhaseolus vulgaris45.9959.4480.06321forward
CNT30504810Papaver somniferumNicotiana attenuata47.8551.3184.43334forward
CNT30637312Papaver somniferumCapsicum annuum5081.1685.39349forward
CNT30182233Papaver somniferumSecale cereale22.6425.486.08158forward
CNT30222279Papaver somniferumHordeum vulgare20.4947.3586.01143forward
CNT30590847Papaver somniferumMusa acuminata20.9231.9583.56146forward
CNT3084565Papaver somniferumVigna radiata45.9918.9979.44321forward
CNT30244810Papaver somniferumAvena sativa22.6419.5587.34158forward
CNT30457014Papaver somniferumSaccharum spontaneum20.9219.1186.99146forward
CNT30134072Papaver somniferumLolium perenne22.6421.7686.08158forward
CNT3066796Papaver somniferumLeersia perrieri20.4936.7685.31143forward
CNT30338563Papaver somniferumEragrostis tef25.2142.5184.66176forward
CNT30595456Papaver somniferumOryza meridionalis25.3631.0584.18177forward
CNT30355562Papaver somniferumLactuca sativa58.4569.9880.64408forward
CNT3054595Papaver somniferumAmborella trichopoda28.2295.1783.76197forward
CNT30325711Papaver somniferumAsparagus officinalis43.9896.2480.13307forward
CNT30580107Papaver somniferumEchinochloa crusgalli22.6430.4485.44158forward
CNT30497454Papaver somniferumDigitaria exilis20.4938.4485.31143forward
CNT30594668Papaver somniferumEragrostis curvula25.3652.5285.88177forward
CNT30603529Papaver somniferumOryza punctata25.3623.1481.92177forward
CNT30174824Papaver somniferumVigna angularis32.2323.6880.89225forward
CNT30336663Papaver somniferumCynara cardunculus46.769.8183.44326forward
CNT30726386Papaver somniferumLupinus angustifolius49.8638.7184.77348forward

Expression of CNT30424172

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSYQFKSWIPKMMHHVFFPTSKEIINDNYTITSS*

>peptide 2 (29 aa)
MTSHKSSSTRHNNPQSLPWYRNRNSLDLT*

>peptide 3 (38 aa)
CVPQHLLLYDNPLLKFQLFVCLHRNNSSHLHKTKYAET*

Sequence

>CNT30424172
AATGTGTACCTCAACACCTGCTCCTCTATGATAATCCATTGCTAAAGTTTCAGCTGTTCGTTTGCCTTCATCGTAACAACTCCTCACACCTTCACAAAAC
CAAATACGCTGAAACTTAACAAGAAAGTCGATAAACAAAACGAAAAATACAGCTTAGCAGCAGCTCACCAATTGGATTCACATTTCCCCAGTAAGTCTCC
TTCTGAGGGTGCTCTAGTGGATCACCATAAACCTCACTAGTACTTGTTAAAAGAAACCTTGCACCAATTCTCTTAGCCAAACCCAACATATTCAAAGTTC
CCATAACATTTGATATGATAGTTTTGATTGGATTGAACTTGTAATGAACAGGTGAAGCAGGACAAGCTAAATGATAAATCTGATCCACTTCTAACAAAAT
TGGTTCAACCACATCATGTCTTATCAATTCAAATCTTGGATTCCCAAAATGATGCATCACGTTTTCTTTCCTACCAGTAAAGAAATTATCAATGACAATT
ACACTATCACCTCTTCCTAATAGTTTATCCACTAGATGACTTCCCACAAATCCAGCTCCACCCGTCACAACAATCCTCAATCTCTTCCCTGGTATCGAAA
TCGGAACTCTCTCGACCTTACCTGACCTATAATTTCCCATTCCAGCATTCACGTCTCCTCCACTGAATCCTCCACCACTAGAACTATATCCACCGTTT