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Detailed information on CNT304238


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 4e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30351770Zea maysEragrostis tef51.3934.1287.69333forward
CNT30556975Zea maysPanicum hallii54.0143.883.14350forward
CNT30551876Zea maysOryza brachyantha52.1639.384.32338forward

Expression of CNT304238

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKLTHCVCLTLSKPMTRWKASGYAAMASCSSLYTCVASVQPNMGSFHMVQ*

>peptide 2 (43 aa)
GGKGKKGEGERERNQCKKVIRSTGRGMAMGRSSHGLYSLPGGL*

Sequence

>CNT304238
GGGGGAAAGGGAAAGAAAGGTGAGGGAGAGAGAGAGAGGAACCAATGCAAGAAGGTGATCCGATCAACAGGCAGAGGCATGGCCATGGGTCGATCTAGCC
ACGGTCTCTACTCGCTGCCGGGGGGCTTGTAGGCGATGAAGCTGACGCACTGCGTCTGCCTGACGTTGTCGAAGCCGATGACGCGGTGGAAGGCGTCCGG
GTACGCGGCGATGGCCTCCTGCAGCTCCTTGTACACCTGCGTGGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAG
TAGCACGGGGAGGTGGAGTTCTCGCGGTACACGAACCCGAGCTTGCTGAACTCGAGGCAGGGTATCCAGCCGTTGCGCAGCAGGTAGTCCACCTGCTTCA
GCAGGTCGTCCGTCGACAGCGGCGGCAGGTACGACAGCGTCTCGAACTTCTTGTTGCCGTAGGCTCCTGGTGCTGCGGCGGGCGACGGGGAGGCTGGCGG
CGGACTTGAGACCCTGGAACGGGGCGACGGCGGTTGCCGACGAGGCCATCATCACGGTGGGCGCCATGGCAAGCTGGCTGGCAGGCTGGCTAGTATGTGT
ACCAGCTAGTAGTAGTAGTAGATCGAGCTTGCTTGCTTGGGTCGTCCT