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Detailed information on CNT3042354


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712512Prunus dulcisGlycine max13.1520.2687.1878forward
CNT30706776Prunus dulcisPrunus avium46.2198.5696.72274forward

Expression of CNT3042354

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVAHKLLHSWLSIVIVFGSGSGSVWCYILKLMTDFEPAVAGCRFVGNLKVERDW*

>peptide 2 (47 aa)
MPRRREILPPTKISVEMNSARPALKASGWYASSGRPTAMFRIGIVGG*

Sequence

>CNT3042354
CCAGAAAGTGATAAAATTACCTGGTAGTTGGTTGCGAACTTGAGGAGACCGCAGGCGACGGTGGACCCGAGGAGCTGGGCGATCCAATAGAGGATGCCGC
GGAGGAGGGAGATATTGCCGCCGACGAAGATCAGCGTGGAGATGAACTCGGCGAGACCCGCCCTCAAGGCGTCCGGGTGGTACGCCTCCTCGGGTCGGCC
AACGGCAATGTTCCGGATCGGCATCGTCGGAGGATGATTAAGATCGGACGGTGGAGATTCGCTGCAGAATTAAGCTGCGTATGGTCGCTCACAAACTACT
TCACTCTTGGCTCAGTATAGTGATAGTGTTTGGTAGTGGCAGTGGTAGTGTTTGGTGTTATATACTGAAGTTGATGACTGATTTTGAACCGGCTGTAGCC
GGTTGCCGGTTCGTAGGGAATTTGAAGGTGGAACGTGATTGGTGAACAGCCTGTGAAATAGCGAAATAATTTTTCTTTTTGGGTTGAGGCGTCGACGTAT
CTCACAGTAATCTCTCGTTTCTGTATCGTTGCTGTTCATACAGCGGAGCATTGCCGCCCATAAAGGCTTGTGGTAGTGACACGTGTAGATAAG