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Detailed information on CNT3042238


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93WD2|CB29_CHLRE, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221568Chlamydomonas reinhardtiiHordeum vulgare22.476.7887.3271forward
CNT30554380Chlamydomonas reinhardtiiOryza glaberrima22.476.4388.7371forward
CNT30596509Chlamydomonas reinhardtiiOryza meridionalis22.474.6788.7371forward
CNT30370789Chlamydomonas reinhardtiiOryza glumipatula22.475.1688.7371forward
CNT30116923Chlamydomonas reinhardtiiOryza nivara22.478.5388.7371forward

Expression of CNT3042238

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MASTEPLLFLAAFWSFSSTPITTNSEGLDR

>peptide 2 (36 aa)
MEKGRQAWPSGRESARTRGSEPGRTPPSREPGGSPS*

>peptide 3 (41 aa)
VAALLGVGLAVAVELSATDQDHLNPDQLGDGEGQASMAQRP*

>peptide 4 (29 aa)
GSSASRGWSRCCGRTQRHRPGSPQSRSAG*

Sequence

>CNT3042238
GGGTAGCAGCGCTTCTCGGGGTTGGTCTCGCTGTTGCGGTAGAACTCAGCGCCACCGACCAGGATCACCTCAATCCAGATCAGCTGGGTGATGGAGAAGG
GCAGGCAAGCATGGCCCAGCGGCCGTGAATCAGCTCGCACTCGCGGAAGCGAGCCAGGCCGAACACCTCCGAGTAGGGAGCCAGGCGGTTCTCCGAGCTA
ACCTCATCGGGGGTAGCCTGGACGATGGCCTCGACGGAGCCCTTGTTGTTCTTGGCAGCGTTCTGGTCGTTCTCGTCAACGCCAATCACCACGAACTCCG
AGGGCTTGGACAGGCC