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Detailed information on CNT30420297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 4e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439068Papaver somniferumAegilops tauschii34.2441.3587.22227forward
CNT30176038Papaver somniferumVigna angularis29.1148.4991.19193forward

Expression of CNT30420297

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMMTWEVKLAASLAGSSLEFEATKPRLRSFTATFLTLNPTLSPGRASRRASWCISTDLTS

>peptide 2 (38 aa)
SRLRSIILQILNQSWIYQSKTWFIKQEPIILQQTTRQN*

>peptide 3 (29 aa)
MIKAYDTCRSIITKLSILKNPAVANSNLQ*

Sequence

>CNT30420297
GGTCACGACTAAGATCTATTATCCTTCAAATTTTAAATCAGAGTTGGATATACCAAAGTAAAACTTGGTTCATCAAACAAGAACCAATCATCTTGCAGCA
AACAACAAGGCAAAACTAGATTAGCACCTAGAATCCTCAATGAAGTTCAAAATCCTTGAAATACAAAACATGAAAAATGATAAAAGCCTATGACACATGT
AGAAGCATCATAACAAAATTGAGCATACTGAAAAACCCTGCTGTTGCCAACTCAAATCTCCAGTAACACATCTATTTCTTCTTAACAGCAGACTTGGTGA
CCTTAGCCCCCGTTGGGTCTTTCTTCTCAACAGCCTTGATAACACCAACAGCAACAGTCTGCCTCATGTCTCTGACAGCAAAACGACCAAGAGGTGGGAT
TTCAGAGAACTTAACAGCAATGTGAGATGTGTGACAGTCAAGGACAGGGGCATAACCGTTACCGATCTGGCCAGGATGGTTCATGATGATGACCTGGGAG
GTGAAGTTGGCTGCTTCCTTAGCAGGGTCATCCTTGGAGTTTGAAGCTACGAAACCACGCTTGAGATCCTTCACAGCAACATTCTTGACATTGAATCCAA
CATTGTCACCTGGAAGAGCTTCTAGGAGAGCCTCATGGTGCATCTCAACAGACTTAACTTCAG