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Detailed information on CNT3041960


BLAST search results

BLAST vs Swiss-Prot:
sp|O04386|TBB_CHLIN, E-value = 2e-47

BLAST vs NONCODE:
NONPOPT002096, E-value = 8e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Chlamydomonas reinhardtiiOryza sativa59.2435.2589.11202forward
CNT30678154Chlamydomonas reinhardtiiSetaria viridis45.1625.289.61154forward
CNT30522155Chlamydomonas reinhardtiiSetaria italica53.9620.9389.67184forward
CNT30641079Chlamydomonas reinhardtiiNymphaea colorata35.4816.2986.78121forward
CNT30534291Chlamydomonas reinhardtiiEucalyptus grandis47.2125.2785.71161forward
CNT30377201Chlamydomonas reinhardtiiArabidopsis thaliana44.5726.5784.21152forward
CNT30728063Chlamydomonas reinhardtiiCorchorus capsularis53.3720.9783.52182forward
CNT30381383Chlamydomonas reinhardtiiManihot esculenta54.2510.5380185forward
CNT30402401Chlamydomonas reinhardtiiBeta vulgaris30.58.7581.73104forward
CNT30629386Chlamydomonas reinhardtiiVigna unguiculata23.7531.483.9581forward
CNT30196370Chlamydomonas reinhardtiiPisum sativum31.3811.2385.98107forward
CNT30486254Chlamydomonas reinhardtiiOlea europaea20.8218.5488.7371forward
CNT30708222Chlamydomonas reinhardtiiGlycine max22.5819.1189.6177forward
CNT3047350Chlamydomonas reinhardtiiPrunus dulcis28.7442.9887.7698forward
CNT3092760Chlamydomonas reinhardtiiSolanum tuberosum29.6214.687.13101forward
CNT30223001Chlamydomonas reinhardtiiHordeum vulgare37.8346.486.82129forward
CNT30390564Chlamydomonas reinhardtiiTriticum turgidum57.7764.886.8197forward
CNT30559885Chlamydomonas reinhardtiiActinidia chinensis54.8435.6985.56187forward
CNT30586804Chlamydomonas reinhardtiiMusa acuminata48.9721.6392.81167forward
CNT30511260Chlamydomonas reinhardtiiSolanum lycopersicum45.4538.4683.87155forward
CNT30553024Chlamydomonas reinhardtiiOryza glaberrima56.613.5289.12193forward
CNT30253208Chlamydomonas reinhardtiiAvena sativa47.2113.3988.82161forward
CNT30261872Chlamydomonas reinhardtiiBrassica rapa47.2118.1980.12161forward
CNT30614070Chlamydomonas reinhardtiiArabis alpina54.2513.3982.7185forward
CNT305432Chlamydomonas reinhardtiiZea mays47.844.4187.12163forward
CNT30213619Chlamydomonas reinhardtiiHelianthus annuus21.1122.7190.2872forward
CNT30627268Chlamydomonas reinhardtiiDaucus carota36.6610.183.2125forward
CNT30681848Chlamydomonas reinhardtiiTriticum urartu40.7615.7187.77139forward
CNT30341625Chlamydomonas reinhardtiiEragrostis tef53.9618.8789.13184forward
CNT30368415Chlamydomonas reinhardtiiSorghum bicolor63.3420.9985.65216forward
CNT30621647Chlamydomonas reinhardtiiCajanus cajan16.4224.2487.556forward
CNT30595966Chlamydomonas reinhardtiiOryza meridionalis32.2617.9490.91110forward
CNT30370171Chlamydomonas reinhardtiiOryza glumipatula59.2423.8289.11202forward
CNT30433292Chlamydomonas reinhardtiiPapaver somniferum29.629.6484.16101forward
CNT3021874Chlamydomonas reinhardtiiPopulus trichocarpa54.8433.6383.42187forward
CNT30322043Chlamydomonas reinhardtiiAsparagus officinalis39.5916.1381.48135forward
CNT30119164Chlamydomonas reinhardtiiCitrus clementina34.925.5484.03119forward
CNT3036150Chlamydomonas reinhardtiiCucumis melo38.7139.1782.58132forward
CNT30332119Chlamydomonas reinhardtiiDioscorea rotundata39.321.185.82134forward
CNT30150001Chlamydomonas reinhardtiiBrachypodium distachyon21.723.4290.5474forward
CNT3099978Chlamydomonas reinhardtiiOryza rufipogon32.5513.791.89111forward
CNT30575530Chlamydomonas reinhardtiiOryza barthii59.2422.3789.11202forward
CNT30116105Chlamydomonas reinhardtiiOryza nivara43.420.0589.86148forward
CNT3049477Chlamydomonas reinhardtiiCucumis sativus17.320.7789.8359forward

Expression of CNT3041960

Peptides detected in this lncRNA

>peptide 1 (80 aa)
LELALLLGGGVLVLLVLGHQVVHVGLGLSELHLVHALTGVPVQESLAAEHGSELLGHALEHLLDGGRVADEGGGHLQLQV*

>peptide 2 (29 aa)
PRTRPPPRRRRPGTAGTRTPGRSCWTRPQ*

>peptide 3 (29 aa)
MVGAGGVDAVLVGDDLPELGTDLVAALATL

>peptide 4 (85 aa)
PSNSPSSSAEASWYCWYSDTRSFMLDSASVNSISSMPSPVYQCRKALRRNMAVNCSDTRLNISWMAVELPMKVADIFSCRSESPW*

Sequence

>CNT3041960
CCCTCGAACTCGCCCTCCTCCTCGGCGGAGGCGTCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGGACTCGGCCTCAGTGAACTCCATCT
CGTCCATGCCCTCACCGGTGTACCAGTGCAGGAAAGCCTTGCGGCGGAACATGGCAGTGAACTGCTCGGACACGCGCTTGAACATCTCCTGGATGGCGGT
CGAGTTGCCGATGAAGGTGGCGGACATCTTCAGCTGCAGGTCTGAGTCGCCATGGTAGGTGCCGGTGGGGTCGATGCCGTGCTCGTCGGAGACGACCTCC
CAGAACTTGGCACCGATCTGGTTGCCGCACTGGCCACCCTG