Detailed information on CNT3041885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595970Chlamydomonas reinhardtiiOryza meridionalis24.5123.288100forward
CNT30321935Chlamydomonas reinhardtiiAsparagus officinalis23.774.5782.4797forward

Expression of CNT3041885

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNVHAELFTCMKFDVVMVSIMRSGYSSRILEISRVPMPEPVPPPREWQTWKPEGREEQGREK

>peptide 2 (50 aa)
SCILLHVHECVATHQPYPLRYSFCTSAVCCCTFTFRAVTCPCRLKHNHSQ*

>peptide 3 (47 aa)
MSLWSASCGRGTPHGSWRSAGCPCRSRCRHPESGRPGSLRVGKNRGER

>peptide 4 (43 aa)
MYEIRCRYGQHHAVGVLLTDLGDQQGAHAGAGAATQRVADLEA*

>peptide 5 (70 aa)
FVYLITRARVCGHPSTLSTALFVLHIRCLLLHLYVQGSYLPLPPEAQSQPVATQIESSQQSSCYGLSHKS*

>peptide 6 (43 aa)
RVSYYTCTSVWPPINLIHCAIRSAHPLSAAAPLRSGQLPAPAA*

Sequence

>CNT3041885
TTCGTGTATCTTATTACACGTGCACGAGTGTGTGGCCACCCATCAACCTTATCCACTGCGCTATTCGTTCTGCACATCCGCTGTCTGCTGCTGCACCTTT
ACGTTCAGGGCAGTTACCTGCCCCTGCCGCCTGAAGCACAATCACAGCCAGTAGCTACGCAGATCGAGAGCTCACAACAGTCCAGCTGCTATGGCCTATC
ACACAAGAGCTAATCCGACGAGATGAATGTCCATGCTGAACTGTTCACATGTATGAAATTCGATGTCGTTATGGTCAGCATCATGCGGTCGGGGTACTCC
TCACGGATCTTGGAGATCAGCAGGGTGCCCATGCCGGAGCCGGTGCCGCCACCCAGAGAGTGGCAGACCTGGAAGCCTGAGGGTAGGGAAGAACAGGGGA
GAGAGAAG