« Back to Chlamydomonas reinhardtii search


Detailed information on CNT3041882


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 8e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30135610Chlamydomonas reinhardtiiLolium perenne17.8921.2879.44180forward
CNT30497456Chlamydomonas reinhardtiiDigitaria exilis9.4432.5383.1695forward

Expression of CNT3041882

Peptides detected in this lncRNA

>peptide 1 (43 aa)
CCSPALPGRQEQARKRYLPPPTYGVTATSPPHTLRVLTHLQDA*

>peptide 2 (37 aa)
MLVTRVLAWVPLSSGRARTGGAGRSARRRRSRGGRWG*

>peptide 3 (73 aa)
MASVCSTTSMNSKTMPRMFSSARTPSLHAHCMAATQESLISFRYCTPLVTSIIMLAPLVSGAKHQIFLAISLSQ

>peptide 4 (34 aa)
VAAAPPCRVGKNRRASAIYRHPPTASPPLVHRTL*

>peptide 5 (33 aa)
MPPLPLVTPPLRQRCQAGPSTRLHRRRCARLSP*

Sequence

>CNT3041882
GTTGCTGCAGCCCCGCCCTGCCGGGTCGGCAAGAACAGGCGCGCAAGCGCTATTTACCGCCACCCACCTACGGCGTCACCGCCACTAGTCCACCGCACAC
TTTGAGAGTTCTCACACACCTGCAAGACGCCTGAACCATGCGCGCCCGAGTCATTCCTGCCCGCGGCTTCGGTACCTGGCTAATGAAAGTGCTACCCCTA
CTGTGTTCTTAACAACACACAATCAGCCCCGAGCTGCGCAACCTTCGCTAGCTGTCGTTACGACATCCGCCAGCCCGCTACAGACCGCACGTGCATAACC
GGACTGCAGGAGGTGCGCACACCTCAAGACCCTACCGCCGCGCCAGTGCCGCCACGCCACAGCCGCAAAGCCGCTCGCCGCCGCCCCAGCGCCTGCTAGG
AGCCCCCGCCGCCGCTGCTGGATCCTCCTCGATCACCCAAGAACCACATGCCGCCGCTGCCGTTGGTCACGCCGCCGCTGCGACAGCGCTGCCAGGCGGG
CCCCAGCACCCGGCTCCACCGCCGCCGCTGCGCGCGCCTGTCCCCATGAACGAAGACAGGCCGCAATCGCAAGCAGGCCGCGCATTTAGAGCTTGTCCTC
GTACTCGGACAGGGGAGCGGGCTCGGGCTTGAGGCCCTTGCGGGTGCGGATGTTGGTGACCAGGGTGTTGGCCTGGGTGCCCTTGTCCAGCGGACGGGCT
CGCACAGGCGGGGCTGGGCGGTCAGCTCGGCGGCGTAGATCACGCGGCGGGCGGTGGGGATGATCTGGCCACCACCGCGGTGAATGGCGTCGGTGTGCAG
CACCACATCCATGAACTCGAAGACGATGCCGCGCATGTTCTCCTCCGCCAGGACACCCTCCTTGCACGCCCACTGCATGGCGGCAACGCAAGAGTCCTTG
ATCTCGTTCAGGTACTGCACACCCTTGGTCACGTCAATCATCATGTTGGCGCCGTTGGTGTCGGGGGCGAAGCACCAGATCTTCTTGGCGATCTCCTTGT
CCCAGC