« Back to Papaver somniferum search


Detailed information on CNT30418420


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532219Papaver somniferumEucalyptus grandis63.5364.9282.051092forward
CNT30516063Papaver somniferumJuglans regia52.9492.1181.76910forward
CNT30615929Papaver somniferumSesamum indicum66.4934.1782.331143forward
CNT30525184Papaver somniferumPhaseolus vulgaris66.3272.881.321140forward
CNT30156103Papaver somniferumPistacia vera55.3280.3282.44951forward
CNT3097291Papaver somniferumSolanum tuberosum66.2673.9682.881139forward
CNT3066849Papaver somniferumLeersia perrieri66.5585.6380.861144forward
CNT30120444Papaver somniferumCitrus clementina63.2968.2180.151088forward
CNT30111644Papaver somniferumFicus carica64.5177.8281.511109forward

Expression of CNT30418420

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHHEIQSQRSTLIVHKFNQPNIKPSNCKYLITVPTDDKAANIA*

>peptide 2 (39 aa)
MTAHAPRNPITKKHTNSSQIQSTKHQTKQLQIPHYSANR*

Sequence

>CNT30418420
TTTAGTTATAATCTCAATTAGGTTATGAGACAAATCAGCGATGTCTACATTTTAAGACACCCCTTATAAGTATAGGGTAAATGGCCTTATAAAACAATGG
TCCCCTCAAAGAAAAGCTGGTCCCCAAAAAATCGTTCTAGGAAAAACAGATGATTTAAGCTCAAAGTCTTTAGCACCAGCCTGGTGTCCTCAAAAAGTAG
TGTGCCTTGAAACTGGAAGGACTTCCACAGCCAGCACTTGTTTTCTTGGGCAATTGCAGGAATGACTGCCCATGCACCACGAAATCCAATCACAAAGAAG
CACACTAATAGTTCACAAATTCAATCAACCAAACATCAAACCAAGCAACTGCAAATACCTCATTACAGTGCCAACAGATGATAAAGCAGCAAACATAGCA
TAGTTTCAACAGAAGAAAGATGAGATAAGAATTTAAAAGATATTCTGCCTACTGGAGAGGACCACCACAAATGTCAACAATCTTTCAATAATCACCACCA
CGAAGACGGAGGACAAGGTGAAGAGTGGATTCTTTCTGAATGTTATAATCAGCTAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAAATCAGCCTCT
GCTGATCAGGTGGAATCCCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATAGTATCGGAACTCTCGACCTCCAAAGTGATCGTCTTCCCAGTGAG
GGTCTTGACAAAAATCTGCATACCACCACGTAGACGAAGAACCAAGTGAAGTGTCGACTCCTTCTGAATATTATAATCAGCTAAGGTTCTTCCATCTTCC
AATTGCTTGCCTGCAAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATTGTGTCAGAACTCTCCA
CCTCTAAGGTTATAGTCTTTCCAGTCAAGGTCTTAACAAAAATTTGCATTCCTCCTCTGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATATT
GTAATCAGCAAGTGTACGACCATCTTCAAGTTGCTTGCCCGCAAAAATCAATCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCCTTG
ACATTATCGATTGTATCAGAGCTTTCAACTTCAAGGGTAATGGTCTTTCCAGTAAGGGTCTTCACAAAGATTTGCATACCACCACGGAGTCGAAGGACAA
GATGGAGAGTAGATTCTTTCTGAATGTTGTAATCAGCAAGAGTTCTCCCATCTTCGAGTTGCTTGCCTGCGAAAATTAACCTCTGCTGGTCTGGAGGAAT
TCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATTGTGTCAGAGCTTTCAACTTCAAGGGTAATGGTTTTTCCAGTAAGGGTCTTCACAAAAATC
TGCATACCACCACGCAGACGAAGAACAAGGTGAAGTGTTGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTACGACCATCTTCGAGCTGTTTACCAGCAA
AGATCAATCTCTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCGACCTCAAGGGTAATGGT
CTTACCAGTTAAAGTTTTCACAAATATTTGCATCTGCATTGAACAATAAAAATTAAATATAAATCTATAAAAAAAAAGAAAACAATTCAATATATAAGTA
ATCCAAAACAGCACTTTGT