Detailed information on CNT30418333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223386Papaver somniferumHordeum vulgare67.7851.5289.73526forward
CNT30592654Papaver somniferumMusa acuminata23.587.2683.06183forward
CNT30439298Papaver somniferumAegilops tauschii73.5859.2990.89571forward
CNT30655399Papaver somniferumRosa chinensis49.3647.791.91383reverse complement
CNT30627905Papaver somniferumDaucus carota29.389.0895.18228forward
CNT30689123Papaver somniferumTriticum urartu33.3842.1192.28259forward
CNT30719954Papaver somniferumTriticum spelta40.59100.3290.79315forward

Expression of CNT30418333

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MRGVVLAFPDQDRSHTCNVRDRPPQLCIDRKAGRYSPQGSGYAQYVAPLIPDMLWCPGVGRSRSSPYRRGARAASGSDLYTRQFIR*

>peptide 2 (58 aa)
HVCAARVVHRFHRLEHILSRYRGALESGGYDVLIGPFPIRPHRRGISALLLPICEASS*

>peptide 3 (58 aa)
MSPPLFPTCYGALGWVGAGRVRIAAEQEQRPDLIYILGNSSGDFTVAKEAPRSIKHFR*

Sequence

>CNT30418333
CACACGTATGTGCAGCTCGCGTGGTTCACCGGTTTCACCGACTAGAACATATTCTCAGTCGATACAGAGGTGCGCTTGAAAGTGGGGGGTATGATGTCCT
TATTGGTCCCTTCCCCATAAGGCCCCATCGTCGGGGCATAAGCGCCCTCTTGCTACCCATATGCGAGGCGTCGTCTTAGCCTTCCCTGACCAGGATCGCT
CCCACACCTGTAACGTTCGTGATCGGCCTCCTCAACTGTGTATCGATCGAAAGGCAGGGCGGTACAGCCCCCAAGGGAGTGGTTACGCCCAGTATGTCGC
CCCCCTTATTCCCGACATGCTATGGTGCCCTGGGGTGGGTAGGAGCAGGTCGAGTCCGTATCGCCGCGGAGCAAGAGCAGCGTCCGGATCTGATCTATAT
ACTCGGCAATTCATCCGGTGACTTCACGGTCGCCAAAGAAGCCCCAAGAAGCATCAAACATTTCCGATGAGATCCATGGAGCAATTCTTAGATAGCAAGC
ACTAGCTCCCAGTGCGACTTCATAAAAGGCTATCATAGAGAGGATCGAAGAGAATGAAACGCACGTGGTGGTCATTATAGCGGTTCCTTCTGATCCTAGA
AAACGCCCGAAAAAACCTGCTACGGAACTACCGAGCAGGGGCAAGAATACGATAAGTAGATACATCAGATAGAGTGCAATCTATGACCAAAAATCAGACA
ATGACAGAGAGTTGAGATTGAGCGAAAGAGTTCCTACAATTCCCAAGAACTTGACTATAGTATGGACTATCCGAGA