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Detailed information on CNT30418220


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Papaver somniferumSetaria viridis20.9321.9588.8990forward
CNT30376827Papaver somniferumArabidopsis thaliana32.3358.981.29139forward
CNT30380328Papaver somniferumManihot esculenta16.2826.8285.7170forward
CNT30631185Papaver somniferumVigna unguiculata22.098.1985.2695forward
CNT30712448Papaver somniferumGlycine max32.3332.7182.01139forward
CNT30186142Papaver somniferumSecale cereale14.4224.3187.162forward
CNT30447268Papaver somniferumSaccharum spontaneum35.3538.9782.89152forward
CNT30605939Papaver somniferumGossypium raimondii37.2129.0480.62160forward
CNT30622400Papaver somniferumCajanus cajan21.6310.1682.893forward
CNT30596369Papaver somniferumOryza meridionalis14.4222.2287.162forward
CNT30154413Papaver somniferumPrunus persica32.3335.9284.17139forward
CNT30114434Papaver somniferumEutrema salsugineum37.4440.4581.37161forward

Expression of CNT30418220

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TAAQVFSRTTTTKIKKPRLLNLNNSSTTRGVKTLENKT*

>peptide 2 (32 aa)
MDGTQVGVFKQTNQVGFSCFLQCQHSMTLETQI

Sequence

>CNT30418220
GACGGCTGCACAGGTGTTTAGCAGAACCACAACCACCAAGATAAAGAAACCCAGGCTTCTAAATCTCAACAACAGCAGCACTACTAGAGGTGTAAAAACA
CTGGAAAATAAAACCTAACATAATGTCATTTCAAGTTCATGATCTTCTTCCCCGCTACTCACACTTTCAGAAAACACATCCCAAAGAGAAAACATCTATA
ATAAACTGACACCATACTAGACACATCCTCCTCCCAGACACCATCATCAGCACTGGTTGATCATGCCCTTTCTCCTCTGATCCTCCTAGCAAGCTGAATA
TCCTTGGGCATGATAGTGACACGCTTTGCATGGATGGCACACAAGTTGGTGTCTTCAAACAAACCAACCAAGTAGGCTTCAGCTGCTTCTTGCAATGCCA
ACACAGCATGACTCTGGAAACGCAAATCAG