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Detailed information on CNT30417081


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 3e-165

BLAST vs NONCODE:
NONMTRT001605, E-value = 7e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488808Papaver somniferumOlea europaea19.4837.1684.02194forward
CNT30173249Papaver somniferumTrifolium pratense53.9256.6579.89537forward
CNT30623366Papaver somniferumDaucus carota62.2559.5681.61620forward
CNT30621493Papaver somniferumCajanus cajan65.4648.5880.21652forward

Expression of CNT30417081

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTKHCCSLGLKGGQRGSLEDLFQSQWPEQRTQTWRT*

>peptide 2 (38 aa)
MPLGPPRVLRDRSFHLGKVDRQPHLVDHLQLCNPQQRP*

>peptide 3 (35 aa)
MENIARRPFFNSFTFSSANASGSSASPKGSKLPPG*

>peptide 4 (56 aa)
MDFLKKQQASLRMSFSSRFCCCCWILHLLGNLFVSLESQLSVQMMEMREPLVCFFC*

Sequence

>CNT30417081
AAATCATTCTCTTGTTATATGCTAAGTAAATTTCTTCAATTTCAGGGAACTTAAAGTTCACTTTTACTATGTAGATACCAGAACCTGAAAAAAGTAAAGG
ATTCAGCGAAATTTTTGGGTATGAAGCTTGTCGACGGTGCTACACCAAATTAGATGCAGGAGCGAAGTTGGTAGCATATGACCAAGCATTGTTGTTCACT
GGGTCTGAAAGGTGGTCAGCGAGGTTCTCTAGAGGACCTTTTCCAGTCACAATGGCCTGAACAAAGAACCCAAACATGGAGAACATAGCAAGGCGACCAT
TCTTCAATTCCTTTACCTTTAGCTCGGCAAATGCCTCTGGGTCCTCCGCGAGTCCTAAGGGATCGAAGCTTCCACCTGGGTAAAGTGGATCGACAACCTC
ACCTAGTGGACCACCTGCAACTCTGTAACCCTCAACAGCGCCCATAAGAATGACCTGTGTGGCCCAAATAGCTAAGATGCTCTGTGCATGAACCAAGCTG
GAATTTCCCAAATAGTCTAGTCCTCCTTCACTGAAAATCTGAGAGCCGGCTTTGAACCAAACAGCTTCGCCAAATTTGACTCCATTTCTAGAGAGGAGTT
CTGGGAAGACACAGCCCAAAGCTCCGAGCATTGCCCACCTTGAATGGATCACCTCAAGTTCGCGGTTCTTCGCAAAGGTCTCTGGGTCAGCTGATAGTCC
AGCAGTGTCCCAACCATAATCACCAGCAAATTCACCAGTTAGGTAAGAAGGCGACTCACCAGAAAAGGGACCGAGGTATTTGACACGGTCTGGACCATAC
CATGGACTTCCTGAAGAAGCAGCAGGCTTCTTTGCGGATGTCTTTCTCATCGAGATTTTGCTGTTGCTGCTGGATCTTACATTTGTTGGGAAATCTGTTT
GTGAGTTTAGAGTCACAGCTTTCCGTGCAAATGATGGAGATGAGAGAGCCATTAGTATGCTTTTTTTGTTAGCTTGAAAATGAAAGATTACTGAAG