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Detailed information on CNT30415958


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30470142Papaver somniferumSaccharum spontaneum20.2318.7280.71140forward
CNT30346089Papaver somniferumEragrostis tef20.5225.2781.69142forward

Expression of CNT30415958

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSAVLFCFVFHGFQLECLALFNVLYFMVLQ

>peptide 2 (45 aa)
MIYDVYSPLFRSFLSQKGGADKRRMEDQPKQQRPKANENKPVMNE*

>peptide 3 (47 aa)
MSNEQVVTSTEVCDTHEGCSNFFSFFLDSTIAKTVSILCLDFYVGVL*

Sequence

>CNT30415958
ACTATTTGCACCCATATATACCCCCTTCACAACCACTGAAGCTTCTGGAGAGTAAATTGAGATTTTAGGGTTTCTGCAAAAACAGCAACAGCCGAACAAC
ATAACCGAGAAAGATGATTTACGACGTGTATTCACCTCTCTTCAGATCCTTCCTCAGCCAGAAAGGAGGAGCGGATAAAAGGAGAATGGAAGACCAGCCT
AAACAGCAGAGACCAAAGGCCAACGAGAATAAGCCTGTGATGAATGAGTAATGAACAAGTAGTAACAAGTACAGAAGTATGTGATACACATGAAGGATGT
AGTAATTTTTTTTCCTTCTTTTTGGATTCTACAATAGCTAAAACAGTATCTATTTTGTGTCTGGATTTTTATGTTGGTGTTTTGTAATAGACCCTCTCTG
GATTCATGGCCTTAAAAGTGAATGCTTGGTAATGTAGTTCCAACTTTGGTCATTAAGTACAGTCTGAGTGCTTGTGCTTCTTGAATCCTTTAATTTTCGT
TGCGGTATTATTTCAGAGCAGCATGTCTTAGAAGTTGTTCCACTTCTATGATGTTGAAGAAAAAATAATTATGGCACAGATGTTTCACTGGTTAACGCTA
AATGTCCGCAGTTCTTTTTTGCTTTGTTTTCCATGGTTTTCAGCTTGAATGTCTTGCATTGTTTAATGTATTGTATTTTATGGTTCTACAAC