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Detailed information on CNT30415027


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09FS0|RR19_NANDO, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198198Papaver somniferumPisum sativum32.318.8287.3126forward
CNT30304119Papaver somniferumTriticum aestivum26.6729.7184.62104forward
CNT30220592Papaver somniferumHordeum vulgare21.2833.7491.5783forward
CNT30562314Papaver somniferumActinidia chinensis20.7732.487.6581forward
CNT30590093Papaver somniferumMusa acuminata34.121.7788.72133forward
CNT30540533Papaver somniferumBrassica napus31.287.1486.89122reverse complement
CNT30447572Papaver somniferumSaccharum spontaneum37.188.4385.52145forward
CNT3018340Papaver somniferumZea mays22.056.4690.786forward
CNT30684618Papaver somniferumTriticum urartu21.288.7190.3683forward
CNT30349424Papaver somniferumEragrostis tef21.2818.9987.9583forward
CNT30357690Papaver somniferumLactuca sativa22.3142.8691.9587forward

Expression of CNT30415027

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVFSIMNSNCMADHCGYNGRCPGPSYYYFFFSSYVELFNFS*

Sequence

>CNT30415027
ATCGCTTCTCGCATGTCCCCGGAAATTTAGAGTAGGTGCAAATTCTCCCAATTTGTGACCCACCATACGATCTGTTATATAAATAGGCAGATGGTCTTTT
CCATTATGAATAGCAATTGTATGGCCGATCATTGTGGGTATAATGGCAGATGGTCTTTTCCATTATGAATAGCAATTGTATGGCCGATCATTGTGGGTAT
AATGGTAGATGCCCGGGACCAAGTTACTATTATTTCTTTTTCTCCTCTTATGTTGAGCTTTTCAATTTTTCCTAATAAATGATTAGCAACAAAAGGATTT
TTTTTTAGTGAACGTGTCACAGCTAATTACTCCTATCTTTTTTTTTTTGTAAAGACGAAGAAACATATTCTCGATTTTCTCTCCTATTTA