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Detailed information on CNT30413997


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Papaver somniferumSetaria viridis8048.7695.51668forward
CNT30519050Papaver somniferumJuglans regia10074.2295.93835forward
CNT30373968Papaver somniferumArabidopsis thaliana83.9545.495.44701forward
CNT30200729Papaver somniferumPisum sativum10034.3395.81835forward
CNT3048154Papaver somniferumPrunus dulcis97.8477.8896.08817forward
CNT30285964Papaver somniferumTriticum aestivum96.1768.8195.77803forward
CNT30224448Papaver somniferumHordeum vulgare78.5682.9394.66656forward
CNT30544510Papaver somniferumBrassica napus10052.1995.57835forward
CNT30239033Papaver somniferumBrassica oleracea10061.4995.45835forward
CNT30444212Papaver somniferumAegilops tauschii80.7251.8195.55674forward
CNT30261854Papaver somniferumBrassica rapa80.9663.4195.71676forward
CNT3010382Papaver somniferumZea mays84.1975.2794.88703reverse complement
CNT30206557Papaver somniferumHelianthus annuus68.7426.6197.39574forward
CNT30365254Papaver somniferumSorghum bicolor80.3674.1494.19671forward
CNT3036408Papaver somniferumCucumis melo1007996.65835forward

Expression of CNT30413997

Peptides detected in this lncRNA

>peptide 1 (43 aa)
PTETLLRLLLPLNDKVQWTSRDVTGGEPPASPRSEHFTGPFNR*

>peptide 2 (43 aa)
MIRFSGLLATSPAANRQRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 3 (28 aa)
MMRRQHKGRAIRQVIMNHLSNGQSPRRPF

Sequence

>CNT30413997
CACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCACCGGCGGCGAACCGCCAGCGTCGCCGCG
ATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACT
AGGAATTCCTCGTTTAAGACCAACAATTGCAATGATCTAGCCCGATCACGATGCACTTTAAAAAGATTACCTGGGCCTGTCGGCCAAGGCTATATACTCG
TTGAATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCC
TCTAAGAAGCTGGCCGCGGAGGGAATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCATCAACT
AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATT
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCA
TAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACAAAGGCCGTGCGATCCGTCAAGTTATCATGAATC
ATCTGAGCAACGGGCAAAGCCCGCGTCGACCTTTT