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Detailed information on CNT3041114


BLAST search results

BLAST vs Swiss-Prot:
sp|P11481|TBA1_VOLCA, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521842Chlamydomonas reinhardtiiSetaria italica21.9116.6890.91154forward
CNT30532757Chlamydomonas reinhardtiiEucalyptus grandis19.3530.9187.5136forward
CNT30517711Chlamydomonas reinhardtiiJuglans regia16.9322.4583.19119forward
CNT30702815Chlamydomonas reinhardtiiQuercus lobata14.0826.985.8699forward
CNT30618174Chlamydomonas reinhardtiiSesamum indicum14.9424.3188.57105forward
CNT30144939Chlamydomonas reinhardtiiMedicago truncatula14.3720.7483.17101forward
CNT30247574Chlamydomonas reinhardtiiAvena sativa14.0820.3792.9399forward
CNT30655738Chlamydomonas reinhardtiiTriticum dicoccoides24.4725.5687.79172forward
CNT3065Chlamydomonas reinhardtiiZea mays12.9437.384.6291forward
CNT30229012Chlamydomonas reinhardtiiAnanas comosus20.3417.2586.01143forward
CNT30204030Chlamydomonas reinhardtiiHelianthus annuus16.9328.6784.87119forward
CNT30624589Chlamydomonas reinhardtiiDaucus carota16.523.3983.62116forward
CNT30340361Chlamydomonas reinhardtiiEragrostis tef17.2123.1491.74121forward
CNT30597037Chlamydomonas reinhardtiiOryza meridionalis19.4926.1591.24137forward
CNT30481833Chlamydomonas reinhardtiiChara braunii20.6349.1582.76145forward
CNT30430260Chlamydomonas reinhardtiiPapaver somniferum21.6226.1282.24152forward
CNT30570286Chlamydomonas reinhardtiiVitis vinifera16.9324.1985.71119forward
CNT30103844Chlamydomonas reinhardtiiOryza rufipogon19.4935.0491.24137forward
CNT30578254Chlamydomonas reinhardtiiOryza barthii14.5136.5692.16102forward
CNT30333509Chlamydomonas reinhardtiiCynara cardunculus17.212282.64121forward
CNT30726406Chlamydomonas reinhardtiiLupinus angustifolius16.9328.483.19119forward

Expression of CNT3041114

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MHTARAGADLIHHGGLQVQEDAAGHVLAGTGLREEGVEGIVATANGLVGGHLAIGLDAVLQAVEL

>peptide 2 (69 aa)
MPCQESSTPHPRPRQRPRRTRRRPPRSPSPGQPGPRGPRRTHPPPYPHRRTSARRHAWRTSGRTCGPGG*

>peptide 3 (31 aa)
GSSQVFRLMHGCPHTLAHVTSLARPFCPLVS*

>peptide 4 (42 aa)
MQRGTCLPAPVSEKKVLKASSPPPMVLSEGIWPSGWMPCSRQ*

Sequence

>CNT3041114
TGGGCAGCAGCCAAGTGTTCAGACTCATGCACGGGTGTCCGCACACGCTTGCGCATGTCACGTCACTAGCTAGACCCTTCTGTCCACTTGTAAGCTAGCA
GCCACTGCTGTTTGTTCAGGCAGCAAGTATGTGTTCAGACTCATGCACGGGTGCCCGTCCACGCTAACGATGCAACGTCATTAGCTAGATCCTTCGATCC
ACAACCTAGCAACCGCTGTTCATCTTGACGGGCAAACAGCAAAGCACTACACTTGCTGCTACCCTGATGCCATGCCAGGAGTCTAGTACTCCTCACCCTC
GCCCTCGCCAGCGCCCTCGGCGGACTCGGCGCCGACCTCCTCGAAGTCCTTCTCCAGGGCAGCCAGGTCCTCGCGGGCCTCGGAGAACTCACCCTCCTCC
ATACCCTCACCGACGTACCAGTGCACGAAGGCACGCTTGGCGTACATCAGGTCGAACTTGTGGTCCAGGCGGCTGAAGATCTCGCCGATAGCAGTGCTGT
TGGAGATCATGCACACGGCGCGTGCCGGTGCGGACCTCATCCACCACGGTGGGCTCCAGGTCCAGGAAGATGCAGCGGGGCACGTGCTTGCCGGCACCGG
TCTCCGAGAAGAAGGTGTTGAAGGCATCGTCGCCACCGCCAATGGTCTTGTCGGAGGGCATCTGGCCATCGGGCTGGATGCCGTGCTCCAGGCAGTAGAG
CTC