Detailed information on CNT3041102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587418Chlamydomonas reinhardtiiMusa acuminata27.0613.8388.57105forward
CNT30435910Chlamydomonas reinhardtiiAegilops tauschii22.6811.0485.2388forward
CNT30365573Chlamydomonas reinhardtiiSorghum bicolor27.0629.7582.86105forward

Expression of CNT3041102

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MKAVLPAIITSVARMMPSGSEWRQPYTLSNLDLVTESFTLMAGNSRLPLACIS*

>peptide 2 (53 aa)
HAVAVGEDEAVHLGLDVLALDAGPGVQMGSISDTMVRAPAAFMALAQPLPTSP*

>peptide 3 (56 aa)
TPWPSGKMKRSTWGLMFWRLMPGQAYRWGRSPTQWCGHRRPSWRWRSPCPHHRSRR*

Sequence

>CNT3041102
CACGCCGTGGCCGTCGGGGAAGATGAAGCGGTCCACCTGGGGCTTGATGTTCTGGCGCTTGATGCCGGGCCAGGCGTACAGATGGGGTCGATCTCCGACA
CAATGGTGCGGGCACCGGCGGCCTTCATGGCGCTGGCGCAGCCCTTGCCCACATCACCGTAGCCGGCGATGAAGGCGGTCTTGCCGGCAATCATCACGTC
AGTGGCGCGCATGATGCCGTCGGGCAGCGAGTGGCGGCAGCCGTACACGTTGTCGAACTTGGACTTGGTGACGGAGTCGTTCACGTTGATGGCGGGGAAC
AGCAGGCTGCCGTTAGCCTGCATCTCATAGAGGCGCTTCACGCCGGTGGTGGTCTCCTCAGACACGCCCATCACCTTCTTGGACATGC