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Detailed information on CNT30410512


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30260853Papaver somniferumBrassica rapa69.9176.0684.33683forward

Expression of CNT30410512

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVLPVKVLTKICIPPLRRRTRWRVDSFWML*

>peptide 2 (79 aa)
MESRLLLDVVVGKSATIFQLLSGKDQTLLVWRDSFLILNLSLDIIDGVRALDFQSDGLTGQGFDKDLHTTSKTEDKMES*

>peptide 3 (30 aa)
MVFPVRVLTKICIPPLRRSTKWRVDSFWML*

Sequence

>CNT30410512
AACTTGACCAATTAGAGAATACCATAAGCTCAAAACCAGTTTACTAAAGCAACAATTTATTCAATAACCAACAAGAACCACATACGATGATAACACTGCA
CCCAACTGTTAATGCAGTGAATAGAACATAAGGGAAATCCTAAAAGAGTAAACGAAAACATAACATAAAGTTCCTCCAACTAAGGGAACACAAACGACAC
CAAATCATCAAGCCATAGCTGAAACACCATCAACAGACACTCTAGTTACCACCACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGT
AATCAGCGAGAGTACGACCATCCTCCAATTGCTTTCCTGCGAAAATCAAACGTTGCTGGTCTGGAGGGATCCCTTCCTTATCTTGGATCTTGGCCTTAAC
ATTGTCAATAGTGTCCGAGCTCTCCACCTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATCTGCATACCACCTCTGAGACGAAGCACCAAA
TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGAGGGATTC
CTTCCTTATCTTGAATCTTAGCCTTGACATTATCGATGGTGTCAGAGCTCTCGACTTCCAAAGTGATGGTCTTACCGGTCAAGGTTTTGACAAAGATTTG
CATACCACCTCTAAGACGGAGGACAAGATGGAGAGTTGATTCCTTCTGGATGTTATAGTCAGCTAGAGTTCTTCCATCTTCCAACTGCTTACCAGCGAAG
ATCAAACGTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGGGTGATGGTCT
TACCAGTAAGAGTTTTCACAAAGATCTGCATCTGTTAATCAAACAAAACACAACAACATCAGACTAACCGATCAAGA