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Detailed information on CNT30409854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q49L12|ATPF_EUCGG, E-value = 3e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Papaver somniferumOryza sativa79.649.3485.98528forward
CNT30678565Papaver somniferumSetaria viridis29.8621.5789.39198forward
CNT30535895Papaver somniferumEucalyptus grandis24.7429.692.68164forward
CNT30703171Papaver somniferumQuercus lobata86.884.8388.89576forward
CNT30282912Papaver somniferumChenopodium quinoa87.4854.191.38580forward
CNT3020344Papaver somniferumCitrullus lanatus29.569.6884.69196forward
CNT30632292Papaver somniferumVigna unguiculata59.1313.0784.18392forward
CNT30505351Papaver somniferumNicotiana attenuata76.7714.6490.77509forward
CNT30160646Papaver somniferumPistacia vera8.624.6887.7257reverse complement
CNT3095993Papaver somniferumSolanum tuberosum62.2910.3286.2413forward
CNT30179302Papaver somniferumSecale cereale26.5527.3389.2176forward
CNT30291829Papaver somniferumTriticum aestivum83.8614.184.89556forward
CNT30222903Papaver somniferumHordeum vulgare24.7457.5487.2164forward
CNT3086153Papaver somniferumVigna radiata27.7583.2684.78184reverse complement
CNT30541474Papaver somniferumBrassica napus85.6718.5786.09568forward
CNT30511193Papaver somniferumSolanum lycopersicum62.1423.2586.65412forward
CNT30554216Papaver somniferumOryza glaberrima76.4777.7685.6507forward
CNT30145240Papaver somniferumMedicago truncatula30.9236.8791.22205forward
CNT30660677Papaver somniferumTriticum dicoccoides83.8641.6884.71556forward
CNT30598585Papaver somniferumFraxinus excelsior78.4360.9691.54520forward
CNT3017990Papaver somniferumZea mays83.7116.7785.05555forward
CNT30232563Papaver somniferumAnanas comosus26.555.1491.48176forward
CNT30205079Papaver somniferumHelianthus annuus89.2981.8889.02592forward
CNT30689283Papaver somniferumTriticum urartu56.4114.7483.16374forward
CNT30621081Papaver somniferumCajanus cajan83.2652.8787.86552forward
CNT3057337Papaver somniferumAmborella trichopoda28.515.0787.3189forward
CNT30121210Papaver somniferumCitrus clementina87.6314.9290.02581forward
CNT30551824Papaver somniferumOryza brachyantha25.4969.2681.66169forward

Expression of CNT30409854

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPILALMVRKCNSLFKQLFIVPRAPYKACWKTCCRT*

>peptide 2 (62 aa)
MAPSRNSSEFRIVLKILYFRLSNKSLNTPFPKKINTPSTTLRFIGFVAKISVLNPKLPTDGQ*

Sequence

>CNT30409854
GCCTGCAGTACAAAGGACTAATCGGTTATTTCTTTCATCGCCCCAAACATGCCAATATTAGCATTGATGGTGCGTAAATGTAACTCGCTGTTCAAACAAC
TTTTCATAGTTCCTAGAGCTCCTTATAAGGCTTGTTGGAAAACTTGTTGTCGGACTTGATTAATCGCTTTTTGTTGTTCAAACTGAATGGTTTCGTTTTT
GTAATTTTCTAATTGTACCAAATTATTATAAGTTGAATTAATCAAATTTGATTTTTCTCGTTCTATCTCAGAATATCCATTCACTCGAAATTGATCGGCT
TCCATTTCCACTTTTCGTAAGCGGGCACTGGCTTTTTCCATCTGTTCAATGGCCCCTTCACGTAATTCTTCTGAATTTCGAATAGTACTCAAGATCCTCT
ATTTTCGATTATCTAATAAATCACTTAACACTCCCTTTCCAAAAAAGATCAATACACCAAGTACTACACTTAGATTTATTGGATTTGTTGCTAAAATATC
GGTATTAAACCCGAAACTCCCGACGGATGGCCAGTGACCCAAAGAAACGAAACAATCAGTTACATTTTTCATATGATCTCCTCTTATAGATATGACTAAC
AAAATCAAACAGAGTTTGTATCAATTCGTCCCTTTTTTTATTGTTTGATTTATTCTTTTTTTT