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Detailed information on CNT30409295


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Papaver somniferumSetaria viridis77.5266.6794.06438forward
CNT30525798Papaver somniferumPhaseolus vulgaris44.0732.2595.58249reverse complement
CNT30177674Papaver somniferumSecale cereale99.1227.5995560reverse complement
CNT30221081Papaver somniferumHordeum vulgare84.623.695.19478forward
CNT30394116Papaver somniferumTriticum turgidum72.3998.7994.62409forward
CNT30555411Papaver somniferumOryza glaberrima46.1964.7696.17261reverse complement
CNT30662247Papaver somniferumTriticum dicoccoides37.3561.5293.84211forward
CNT3017925Papaver somniferumZea mays99.1249.0895.89560reverse complement
CNT3067405Papaver somniferumLeersia perrieri73.2710092.27414forward
CNT30647597Papaver somniferumRosa chinensis54.8760.7893.55310forward
CNT30203328Papaver somniferumHelianthus annuus99.1268.0496.61560forward
CNT30371139Papaver somniferumOryza glumipatula55.0462.8395.5311reverse complement
CNT30102660Papaver somniferumOryza rufipogon59.1289.394.01334forward
CNT30576588Papaver somniferumOryza barthii23.0129.6194.62130reverse complement
CNT30604605Papaver somniferumOryza punctata35.5887.0193.53201reverse complement

Expression of CNT30409295

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MISSWSERMISHTGTHTRPRLLREAAVGNFPQWAKA*

>peptide 2 (37 aa)
MGESLTEQCRVEVEGPRVMNFFSRRRSNDGIWGISIG*

Sequence

>CNT30409295
ATACTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTAGCGGACGGGTGAGTAACGCGTAAGAACC
TGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTATGATT
AGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTCATACACGGCCCAGACTCCTAC
GGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAACTTCTTTTCCCGA
AGAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCACGGTAAGACAGAGGATGCAAGCTTATCCGGAATGATTGGGC
GTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGTCAAATCCCAGTGCTCAACCCTGGACAAGC