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Detailed information on CNT30408881


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 7e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374608Papaver somniferumArabidopsis thaliana7.4420.1685.5376forward
CNT30526705Papaver somniferumPhaseolus vulgaris13.7129.9885.71140forward
CNT3060770Papaver somniferumArabidopsis lyrata8.5226.1383.9187forward

Expression of CNT30408881

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQVHQRNICIQHQPFLLNRERNPSNGVKN*

>peptide 2 (41 aa)
MTFPKVPKALVSDSSVVAHASPPTKHLYSTSAISTEQRKKP*

>peptide 3 (41 aa)
MLRPSRFCPFIPSMASLMDCSSPKVTNPKPLDLPVSRSLMI*

Sequence

>CNT30408881
ACTAATCTCTGTTGCTATTCTTTGCATCGTTATCACACAAGATCATCAGATCTGAACAAAGTACAGATCCCAAAAGTGAACCGGTAACACCATGAACCAT
CAACCATAGATAGAGAAGGACTCGAGATCATCAAACACTACCTAGAACCAAAAACAAGAACCAGAACATAACTAACACCAAACTCGACTGAAATTAAAAA
AGATAAGGGTCTAATTTTATCTACTAGGGAATCAAAACCCTAACTCCTCCAGCTGCCTTCTGAACGGCCACCACCACCACCGTAACCGCCACCACCGCTT
CCTCTGTCACCTCCATAACCACCACCACCTTCACGACGTTGACCGTAGCCGCCACCTCCGTATCCACCACCACCGCCGCCGCTGCGGAAGCCGCCACCGC
CACCGCCACCACTTCCTCGTGATTGAGCTTCGTTTACAGTGATGTTACGGCCGTCAAGGTTCTGTCCGTTCATTCCTTCAATGGCATCTCTCATGGATTG
TTCGTCACCGAAAGTGACGAACCCAAAACCCCTGGATCTTCCAGTCTCACGGTCATTGATGATCTAAAAACACACAAACAAACACAAATTAGATACAGAA
TCACAAGAAAAACATCAAAAAAAGAAAGATCTGAACTAAAATTGATCGATCTACGTCTCTAAAGGGACGAAGATGAACATACCGCTTAAGGTTGATCAAT
AATAAACACAGATATCATAGAGAAACAGTAACAGTAACATGTAGAGAGAACAAGAAGAAAGATCCTGATCGAACAACCAGAGTCCGATTCGATCTCTGCG
AACGTTAATCGCAAGAACGAACCTTAGATTCAATGACCTTCCCAAAAGTACCGAAAGCATTGGTTAGTGATTCGTCAGTGGTAGCCCATGCAAGTCCACC
AACGAAACATCTGTATTCAACATCAGCCATTTCTACTGAACAGAGAAAGAAACCCTAGTAATGGAGTAAAGAACTAACGAAGAAGAAAGTAGTGAAAAGA
GGGGATAAGAACAAGATCCAC